Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   M949_RS09275 Genome accession   NZ_CP006649
Coordinates   1987172..1989262 (+) Length   696 a.a.
NCBI ID   WP_014938430.1    Uniprot ID   -
Organism   Riemerella anatipestifer CH3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1982172..1994262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M949_RS09255 (M949_1941) - 1983356..1984234 (+) 879 WP_004918508.1 IS982-like element ISRa1 family transposase -
  M949_RS09260 (M949_1942) - 1984329..1985600 (+) 1272 WP_014938427.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  M949_RS09265 (M949_1943) - 1985728..1986069 (+) 342 WP_014938428.1 zinc ribbon domain-containing protein YjdM -
  M949_RS09270 (M949_1944) - 1986113..1987054 (-) 942 WP_014938429.1 sulfate/molybdate ABC transporter ATP-binding protein -
  M949_RS09275 (M949_1945) recG 1987172..1989262 (+) 2091 WP_014938430.1 ATP-dependent DNA helicase RecG Machinery gene
  M949_RS09280 (M949_1946) - 1989300..1990019 (-) 720 WP_038694313.1 hypothetical protein -
  M949_RS09285 (M949_1947) - 1990100..1990534 (+) 435 WP_014938432.1 RNA-binding S4 domain-containing protein -
  M949_RS09290 (M949_1948) - 1990506..1991033 (-) 528 WP_014938433.1 shikimate kinase -
  M949_RS09310 (M949_1949) - 1991569..1992720 (+) 1152 WP_014938434.1 class I SAM-dependent methyltransferase -
  M949_RS09315 (M949_1950) - 1992787..1993434 (+) 648 WP_014938435.1 OmpA family protein -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 79723.42 Da        Isoelectric Point: 9.6106

>NTDB_id=100674 M949_RS09275 WP_014938430.1 1987172..1989262(+) (recG) [Riemerella anatipestifer CH3]
MTLETSIEYLKGVGPERAKLIKNLLGISTVEDLLTFYPIRYLDKSRLYRVADLQKNADVEIQLKGKIRELQEVVYGKGQK
RLSAKFYDETGVIELVWFRYTKWMVEQMPINKEVFIFGKVNWFNGVFSMPHPEIELDEKKALSETLLPIYSGSEKLTKRG
VNNKFFQTIIREVIKQTSFFLEENLPSNILSSLKLIGRREAYQNIHFPQNINWIDEANKRLKFEEAFFFQLGYGLKKQYQ
KVSNVGIPFPLVGDYFNNFYQNKLPFELTNAQKRVLKEIRNDMKKPIQMNRLLQGDVGSGKTMVALLSMLLALDNGTQAC
LMAPTEILAQQHYNSIVELLEGTNIEVRLLTGSTKKSERKDIHEGLESGRLSILVGTHAILEDAVKFKNLGLGIIDEQHR
FGVAQRAKLWSKNKIPPHILIMTATPIPRTLAMSFYSDLDVSVIDELPTGRKPIITAHRREKDRLSVYQFAKEEIQKGRQ
IYFVYPLIEESETLDYKNLMEGFEIVLDYFKEYEVTMLHGKMKPHEKDEAMNYFASGKAQIMVATTVIEVGVNVPNASVM
VIESAERFGLSQLHQLRGRVGRGAEQSYCILMSSDKLSTEGRKRIKTMCETNDGFKISEVDMQLRGPGDILGTQQSGIVD
FKKLDLTKDASVIKVAQKIVTLLVQSDPNLTHPVHTQLRNYYIKQYKGKNKWGKIS

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=100674 M949_RS09275 WP_014938430.1 1987172..1989262(+) (recG) [Riemerella anatipestifer CH3]
TTGACTTTAGAAACTTCCATAGAATACCTTAAAGGAGTAGGTCCAGAGCGGGCAAAACTCATCAAAAATCTGCTGGGAAT
AAGTACGGTGGAAGATTTGCTTACATTCTACCCAATAAGATATTTAGATAAAAGCCGATTGTATAGAGTAGCAGATTTGC
AGAAAAATGCAGATGTTGAGATACAATTAAAGGGTAAAATCAGAGAATTGCAGGAGGTGGTTTATGGTAAGGGACAAAAA
CGATTGTCTGCAAAATTCTATGATGAAACAGGCGTGATAGAACTGGTTTGGTTTAGATATACCAAATGGATGGTGGAGCA
GATGCCTATCAATAAAGAAGTATTTATTTTTGGTAAGGTCAATTGGTTTAATGGAGTTTTCTCTATGCCTCATCCAGAGA
TAGAGCTGGACGAGAAAAAGGCTTTATCTGAAACTTTATTGCCTATCTATTCAGGGAGTGAAAAACTTACCAAAAGAGGG
GTTAATAATAAATTTTTCCAAACCATCATCAGGGAAGTTATTAAACAGACTTCTTTCTTTTTAGAAGAAAATTTGCCGAG
TAATATCCTTAGCTCGCTTAAACTAATTGGTAGAAGAGAGGCTTATCAAAATATCCATTTTCCTCAAAATATAAATTGGA
TAGATGAGGCTAATAAACGCCTGAAATTTGAGGAAGCGTTTTTCTTTCAGCTAGGGTATGGTCTTAAAAAGCAATATCAA
AAAGTATCCAATGTAGGGATTCCTTTTCCGTTAGTGGGAGATTATTTTAATAATTTTTATCAAAATAAATTACCCTTTGA
ACTCACTAATGCCCAAAAGCGAGTTCTGAAAGAGATTAGGAATGATATGAAAAAGCCTATCCAAATGAACAGGCTTTTGC
AGGGCGATGTAGGCTCAGGTAAAACTATGGTGGCGTTGCTTTCAATGCTATTGGCGTTGGATAATGGGACACAAGCGTGC
CTTATGGCTCCTACGGAAATTTTGGCTCAGCAACATTATAACAGCATAGTTGAACTTTTAGAAGGAACGAACATTGAAGT
AAGGCTCTTAACAGGTTCTACAAAAAAATCGGAACGGAAAGATATTCACGAAGGATTAGAATCTGGGAGGTTGTCTATCT
TGGTAGGAACTCACGCTATATTGGAAGATGCGGTTAAGTTTAAAAATTTGGGCTTGGGCATTATAGACGAGCAACATCGT
TTTGGGGTGGCACAAAGAGCGAAACTTTGGTCTAAAAATAAAATTCCACCGCATATTTTAATTATGACGGCAACGCCTAT
CCCTAGAACTTTAGCAATGAGTTTTTATTCGGATTTAGATGTCTCGGTAATAGATGAGTTGCCTACGGGGAGAAAGCCTA
TCATTACAGCTCATAGGAGAGAAAAAGACAGGCTTTCGGTTTACCAGTTTGCTAAGGAAGAAATTCAAAAGGGAAGGCAA
ATTTATTTTGTGTATCCACTAATAGAAGAATCTGAGACTTTAGACTATAAAAACTTGATGGAAGGCTTTGAAATAGTACT
AGACTATTTTAAGGAATACGAAGTGACCATGCTACACGGCAAAATGAAACCTCACGAAAAAGATGAAGCGATGAATTATT
TTGCTTCAGGTAAGGCTCAAATTATGGTGGCTACTACGGTTATAGAGGTTGGTGTAAATGTACCAAATGCTTCGGTAATG
GTAATAGAAAGTGCCGAAAGGTTTGGGCTTTCACAGTTGCATCAGCTTAGAGGTAGAGTGGGACGAGGGGCAGAGCAGAG
CTATTGTATTTTGATGTCCTCGGACAAACTATCCACGGAAGGACGGAAACGAATTAAAACGATGTGCGAAACCAATGATG
GATTTAAAATCTCGGAGGTAGATATGCAACTTAGAGGTCCTGGGGATATATTAGGAACTCAGCAAAGTGGTATTGTAGAT
TTTAAAAAATTGGATTTAACTAAAGATGCTTCGGTAATTAAGGTAGCACAGAAAATAGTAACCCTATTGGTGCAAAGCGA
TCCTAATTTGACTCATCCTGTACACACTCAATTAAGAAATTACTACATAAAGCAATATAAAGGTAAAAACAAATGGGGAA
AAATCAGTTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(611-696)

Helicase conserved C-terminal domain (Helicase_C)

(473-583)

DEAD/DEAH box helicase (DEAD)

(270-429)

RecG wedge domain (RecG_wedge)

(7-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

41.594

99.138

0.412
  recG/mmsA Streptococcus pneumoniae R6

40.438

98.42

0.398
  recG/mmsA Streptococcus pneumoniae R36A

40.438

98.42

0.398
  recG Neisseria meningitidis strain C311

41.4

94.397

0.391

Multiple sequence alignment