Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FX000_RS14595 Genome accession   NZ_LR698983
Coordinates   2793641..2794246 (-) Length   201 a.a.
NCBI ID   WP_003183986.1    Uniprot ID   Q65GP5
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2788641..2799246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS14565 - 2789301..2789684 (+) 384 WP_003183976.1 TIGR04086 family membrane protein -
  FX000_RS14570 yajC 2789881..2790144 (-) 264 WP_085959518.1 preprotein translocase subunit YajC -
  FX000_RS14575 tgt 2790191..2791336 (-) 1146 WP_003183980.1 tRNA guanosine(34) transglycosylase Tgt -
  FX000_RS14580 queA 2791365..2792393 (-) 1029 WP_003183982.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FX000_RS14585 - 2792434..2792634 (-) 201 WP_003183984.1 DUF2905 domain-containing protein -
  FX000_RS14590 ruvB 2792627..2793631 (-) 1005 WP_003183985.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  FX000_RS14595 ruvA 2793641..2794246 (-) 606 WP_003183986.1 Holliday junction branch migration protein RuvA Machinery gene
  FX000_RS14600 - 2794369..2794890 (-) 522 WP_003183987.1 intercompartmental signaling factor BofC -
  FX000_RS14605 - 2795133..2795783 (+) 651 WP_003183988.1 protein kinase family protein -
  FX000_RS14610 - 2796061..2796240 (-) 180 WP_003183990.1 small acid-soluble spore protein H -
  FX000_RS14615 - 2796336..2796800 (-) 465 WP_003183991.1 DinB family protein -
  FX000_RS14620 - 2796861..2797571 (-) 711 WP_003183992.1 poly-gamma-glutamate hydrolase family protein -
  FX000_RS14625 - 2797985..2798164 (+) 180 WP_025808021.1 hypothetical protein -
  FX000_RS14630 - 2798256..2798582 (-) 327 WP_003183994.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22508.86 Da        Isoelectric Point: 5.7383

>NTDB_id=1006680 FX000_RS14595 WP_003183986.1 2793641..2794246(-) (ruvA) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKKNSKETIYTYHYVREDTNALYGFSTREEKMLFTKMLNVTGIGP
KGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADAVPEIAADLFNHEEREQIHEAATALEEAL
EALRALGYSDREIKKVQPHLKKEEALSTDQYVKKALQKLLK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1006680 FX000_RS14595 WP_003183986.1 2793641..2794246(-) (ruvA) [Bacillus licheniformis isolate MGYG-HGUT-02357]
TTGATCGAATTCGTAAAAGGGACGATTGATTATGTATCGCCCCAATATATTGTCATTGAAAACGGCGGGATCGGCTATCA
GATCTTCACGCCAAATCCGTTTATTTATAAGAAAAACAGCAAAGAAACAATCTATACATACCATTATGTAAGAGAAGACA
CGAATGCGCTGTACGGCTTTTCGACAAGGGAAGAAAAAATGCTGTTTACGAAAATGCTGAATGTTACGGGGATCGGCCCA
AAAGGAGCGCTTGCGATCCTCGCTTCCGGCGATCCGGGAGCGGTGATTGAAGCGATCGAGAATGAGGACGAAGCATTTCT
CGTCAAATTTCCCGGCGTAGGCAAAAAAACGGCAAGGCAGATCATCCTTGACCTGAAAGGGAAGCTTGCGGATGCCGTTC
CTGAAATCGCTGCCGATCTGTTTAACCATGAAGAGCGGGAGCAAATTCATGAGGCGGCAACGGCTCTTGAGGAAGCGCTT
GAAGCATTGAGGGCGCTCGGCTATTCCGATCGGGAAATTAAAAAAGTCCAGCCTCATTTGAAAAAGGAAGAGGCGCTTTC
GACAGATCAATACGTTAAAAAAGCATTGCAAAAATTGTTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65GP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

83.582

100

0.836
  ruvA Streptococcus pneumoniae R6

40.291

100

0.413
  ruvA Streptococcus pneumoniae D39

40.291

100

0.413
  ruvA Streptococcus pneumoniae TIGR4

40.291

100

0.413

Multiple sequence alignment