Detailed information NTG1006318

Bioinformatically predicted

Overview

• Name: comR
• Type: Regulator
• Locus tag: FJH52_RS09455
• Genome accession: NZ_LR595848
• Coordinates: 1880460..1881359 (-)
• Length: 299 a.a.
• NCBI ID: WP_000904862.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 4559 isolate 4559
• Function: activate transcription of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1875460..1886359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJH52_RS09430	rsmA	1875790..1876662 (-)	873	WP_001216879.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
FJH52_RS09435	-	1876793..1877101 (-)	309	WP_000333257.1	hypothetical protein	-
FJH52_RS09440	-	1877094..1877735 (-)	642	WP_000565531.1	ABC transporter ATP-binding protein	-
FJH52_RS09445	-	1877737..1879767 (-)	2031	WP_000825246.1	bacteriocin-associated integral membrane family protein	-
FJH52_RS09450	-	1879844..1880140 (-)	297	WP_000815392.1	lactococcin 972 family bacteriocin	-
FJH52_RS09455	comR	1880460..1881359 (-)	900	WP_000904862.1	helix-turn-helix transcriptional regulator	Regulator
FJH52_RS09460	rnmV	1881431..1881991 (-)	561	WP_000660013.1	ribonuclease M5	-
FJH52_RS09465	-	1881991..1882764 (-)	774	WP_000575596.1	TatD family hydrolase	-
FJH52_RS09470	-	1883069..1884046 (-)	978	Protein_1874	DUF1542 domain-containing protein	-
FJH52_RS09475	rpmH	1884252..1884386 (-)	135	WP_000831905.1	50S ribosomal protein L34	-
FJH52_RS09480	-	1884531..1885745 (-)	1215	WP_000666469.1	pyridoxal phosphate-dependent aminotransferase	-
FJH52_RS09485	-	1885901..1886194 (-)	294	WP_000977363.1	hypothetical protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 35409.16 Da
• Isoelectric Point: 4.7732

>NTDB_id=1006318 FJH52_RS09455 WP_000904862.1 1880460..1881359(-) (comR) [Streptococcus pneumoniae strain 4559 isolate 4559]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide

• Length: 900 bp

>NTDB_id=1006318 FJH52_RS09455 WP_000904862.1 1880460..1881359(-) (comR) [Streptococcus pneumoniae strain 4559 isolate 4559]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

• ComR tetratricopeptide (ComR_TPR) (70-291)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR	Streptococcus mutans UA159	38.095	98.328	0.375
comR	Streptococcus suis P1/7	37.457	97.324	0.365
comR	Streptococcus suis 05ZYH33	37.457	97.324	0.365
comR	Streptococcus pyogenes MGAS8232	36.577	99.666	0.365