Detailed information NTG1006209

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABHN08_RS16195
• Genome accession: NZ_CP157354
• Coordinates: 3569555..3571789 (-)
• Length: 744 a.a.
• NCBI ID: WP_348969984.1
• Uniprot ID: A0AAU7EPR3
• Organism: Pseudomonas atacamensis strain GY-AP11
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3564555..3576789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHN08_RS16160 (ABHN08_16160)	murB	3564933..3565952 (-)	1020	WP_122746710.1	UDP-N-acetylmuramate dehydrogenase	-
ABHN08_RS16165 (ABHN08_16165)	-	3565949..3566413 (-)	465	WP_122746711.1	low molecular weight protein-tyrosine-phosphatase	-
ABHN08_RS16170 (ABHN08_16170)	kdsB	3566413..3567177 (-)	765	WP_073472249.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABHN08_RS16175 (ABHN08_16175)	-	3567174..3567359 (-)	186	WP_003179363.1	Trm112 family protein	-
ABHN08_RS16180 (ABHN08_16180)	lpxK	3567383..3568393 (-)	1011	WP_151552462.1	tetraacyldisaccharide 4'-kinase	-
ABHN08_RS16185 (ABHN08_16185)	-	3568393..3568821 (-)	429	WP_016771006.1	ExbD/TolR family protein	-
ABHN08_RS16190 (ABHN08_16190)	exbB	3568818..3569453 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABHN08_RS16195 (ABHN08_16195)	comA	3569555..3571789 (-)	2235	WP_348969984.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABHN08_RS16200 (ABHN08_16200)	-	3571926..3572444 (+)	519	WP_016770668.1	DUF2062 domain-containing protein	-
ABHN08_RS16205 (ABHN08_16205)	-	3572584..3573363 (-)	780	WP_039760202.1	ABC transporter permease	-
ABHN08_RS16210 (ABHN08_16210)	-	3573360..3574292 (-)	933	WP_348969985.1	ABC transporter ATP-binding protein	-
ABHN08_RS16215 (ABHN08_16215)	-	3574426..3575049 (-)	624	WP_024013937.1	glutathione S-transferase family protein	-
ABHN08_RS16220 (ABHN08_16220)	-	3575093..3575752 (-)	660	WP_073472239.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81849.00 Da
• Isoelectric Point: 9.6586

>NTDB_id=1006209 ABHN08_RS16195 WP_348969984.1 3569555..3571789(-) (comA) [Pseudomonas atacamensis strain GY-AP11]
MRKGMMALAVGLLAPVLLPALPPVGLLVVLPVVALMLLPFRSYPLAFLLFGFTWACFSAQWALTDRLPPSLDGETRWLEG
RVVGLPQHNDGVVRFELADARSRHEKLPSLLRLAWYAGPAVNSGERWRLAVKLKRPSGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARYAWRDGVRQRLLAADAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPVRWPWLPWACGLAFTAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPFWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERIEEGRADVWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPALHKLNVQALDLMLLSHADADHAGGA
RAVMQGLKVHRVVSGDVPNLPPELNAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIRAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKTLQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=1006209 ABHN08_RS16195 WP_348969984.1 3569555..3571789(-) (comA) [Pseudomonas atacamensis strain GY-AP11]
ATGCGCAAAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTATTGCCGGCCTTGCCGCCGGTCGGCTTGCT
GGTAGTGCTGCCAGTGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCATTGGCGTTTTTGCTGTTTGGTTTCACGT
GGGCTTGTTTCAGTGCGCAGTGGGCGCTGACTGACCGCTTGCCACCGAGTCTGGACGGCGAGACCCGTTGGCTTGAAGGG
CGAGTGGTCGGCTTGCCGCAACACAACGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGTTCACGCCACGAAAAGCT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGGCGGTGAATAGTGGTGAGCGTTGGCGTCTGGCGGTGAAATTGA
AGCGCCCGAGTGGCTTGCTCAACCCGGACGCCTTCGATTACGAGGCCTGGCTGCTGGCGCAACGGATCGGGGCGACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGTATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGCCGA
TGCACAAGGACGAGAGGGCGCGCTGGCGGCGCTGGTGCTTGGTGACGGTTCAGGCCTCAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGCCAGCACATCGGCTTGCTCGCCGCAGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCATGGCTGCCGTGGGCGTGCGGCCTGGCCTTCACGGC
GGCGCTGGGTTACGGCCTGCTCGCCGGTTTCGATGTGCCAGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGCCTGCGTTTTCGCCATCTCGGTGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGCTGTTTGATCCACTG
GCCAGTTTGCGTCCCGGCTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTGGGGGC
CTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCAATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCGATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCTTGGGTCAGCCTCGTGGTGTTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAGGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCTGCCGCCATTCCATTTTGGGCTTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGAGGCGTGCCAATGCGTCCATTGGGCTGGCCGCTGCTGTTGCTCCTGGCA
TTGCCGCCTCAAGAGCGAATAGAAGAAGGGCGGGCCGATGTCTGGCAACTCGACGTCGGCCAAGGTCTGGCCATCCTCAT
CCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGGGTGGTGCTGC
CAGCGTTACATAAACTCAACGTGCAAGCGCTCGACCTGATGCTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGCGCT
CGGGCGGTAATGCAGGGATTGAAGGTGCACCGCGTGGTCAGCGGCGATGTGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAATGGCAGTGGGACGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCGGCCGATGACAGCA
ACCAGCGCTCCTGTGTCTTGCAGATCGAGGCCAACGGCGAACGCCTGTTGCTCACCGGCGATATCGACATTCGCGCCGAG
CGCGTTCTGCTCGACAGCCCACTGGCCGTGCCGACGCAGTGGCTGCAATCGCCACATCACGGCAGTCGCAGTTCATCGTC
GATGGCCCTGCTCAAAACCTTGCAGCCCGAAGCGGTGCTGATCTCCCGCGGCCACGGCAACTCCTTCGGTCATCCGCATC
CGACCGTGCTGGCGCGCTACCGCAAGCAAGGCCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAGCCGCCCTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCACCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.309	96.64	0.602
comA	Ralstonia pseudosolanacearum GMI1000	34.961	100	0.366