Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABHN08_RS16190 Genome accession   NZ_CP157354
Coordinates   3568818..3569453 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas atacamensis strain GY-AP11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3563818..3574453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHN08_RS16155 (ABHN08_16155) - 3564213..3564683 (-) 471 WP_016771000.1 (2Fe-2S)-binding protein -
  ABHN08_RS16160 (ABHN08_16160) murB 3564933..3565952 (-) 1020 WP_122746710.1 UDP-N-acetylmuramate dehydrogenase -
  ABHN08_RS16165 (ABHN08_16165) - 3565949..3566413 (-) 465 WP_122746711.1 low molecular weight protein-tyrosine-phosphatase -
  ABHN08_RS16170 (ABHN08_16170) kdsB 3566413..3567177 (-) 765 WP_073472249.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABHN08_RS16175 (ABHN08_16175) - 3567174..3567359 (-) 186 WP_003179363.1 Trm112 family protein -
  ABHN08_RS16180 (ABHN08_16180) lpxK 3567383..3568393 (-) 1011 WP_151552462.1 tetraacyldisaccharide 4'-kinase -
  ABHN08_RS16185 (ABHN08_16185) - 3568393..3568821 (-) 429 WP_016771006.1 ExbD/TolR family protein -
  ABHN08_RS16190 (ABHN08_16190) exbB 3568818..3569453 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABHN08_RS16195 (ABHN08_16195) comA 3569555..3571789 (-) 2235 WP_348969984.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABHN08_RS16200 (ABHN08_16200) - 3571926..3572444 (+) 519 WP_016770668.1 DUF2062 domain-containing protein -
  ABHN08_RS16205 (ABHN08_16205) - 3572584..3573363 (-) 780 WP_039760202.1 ABC transporter permease -
  ABHN08_RS16210 (ABHN08_16210) - 3573360..3574292 (-) 933 WP_348969985.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=1006208 ABHN08_RS16190 WP_016771007.1 3568818..3569453(-) (exbB) [Pseudomonas atacamensis strain GY-AP11]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1006208 ABHN08_RS16190 WP_016771007.1 3568818..3569453(-) (exbB) [Pseudomonas atacamensis strain GY-AP11]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATTCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCACTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGTTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCCGGCATGACTACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGGATTCCAGCGGTGTTCTTCCACCGGTTTTTGCAGCGCCGCATCGACGAGCTGGTGGTTGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTAGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment