Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FGL23_RS10205 Genome accession   NZ_LR594049
Coordinates   2112632..2113222 (-) Length   196 a.a.
NCBI ID   WP_045773043.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2107632..2118222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS10170 (NCTC10231_02035) spx 2107722..2108120 (-) 399 WP_008809970.1 transcriptional regulator Spx -
  FGL23_RS10175 (NCTC10231_02036) recA 2108207..2109358 (-) 1152 WP_008809971.1 recombinase RecA Machinery gene
  FGL23_RS10180 (NCTC10231_02037) cinA 2109417..2110673 (-) 1257 WP_045773039.1 competence/damage-inducible protein A Machinery gene
  FGL23_RS10190 (NCTC10231_02038) - 2110943..2111353 (+) 411 WP_061603237.1 helix-turn-helix domain-containing protein -
  FGL23_RS10195 (NCTC10231_02039) - 2111404..2112063 (-) 660 WP_061603238.1 CPBP family intramembrane glutamic endopeptidase -
  FGL23_RS10200 (NCTC10231_02040) - 2112068..2112622 (-) 555 WP_061603239.1 DNA-3-methyladenine glycosylase I -
  FGL23_RS10205 (NCTC10231_02041) ruvA 2112632..2113222 (-) 591 WP_045773043.1 Holliday junction branch migration protein RuvA Machinery gene
  FGL23_RS10210 (NCTC10231_02042) - 2113392..2113895 (+) 504 WP_046164533.1 helix-turn-helix domain-containing protein -
  FGL23_RS10215 (NCTC10231_02043) - 2113879..2114400 (+) 522 WP_061603240.1 RDD family protein -
  FGL23_RS10220 (NCTC10231_02044) hexB 2114436..2116379 (-) 1944 WP_061582850.1 DNA mismatch repair endonuclease MutL Machinery gene
  FGL23_RS10225 (NCTC10231_02045) brsR 2116564..2117004 (+) 441 WP_045504656.1 LytTR family DNA-binding domain-containing protein Regulator
  FGL23_RS10230 (NCTC10231_02046) - 2117001..2117471 (+) 471 WP_061582851.1 DUF3021 family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21605.02 Da        Isoelectric Point: 5.7014

>NTDB_id=1006137 FGL23_RS10205 WP_045773043.1 2112632..2113222(-) (ruvA) [Streptococcus gordonii strain NCTC10231]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFATEEEKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVVADGPAESKAPVQTAENQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1006137 FGL23_RS10205 WP_045773043.1 2112632..2113222(-) (ruvA) [Streptococcus gordonii strain NCTC10231]
ATGTACGAATATTTTAAAGGAATTATCAGTAAAATTACAGCCAAGTACATCGTATTGGAAGTCAACTCTATCGGCTATAT
TCTTCATGTGGCCAACCCCTATGCTTACTCAGGACATCTCCATCAGGAAGCTAAGGTCTATGTTCACCAGGTGGTGAGAG
AAGACGCGGAGCTCTTATACGGTTTTGCGACTGAGGAGGAGAAACAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGCCCAGTGTCTGCCCTGGCTATCATTGCTGCAGATGATAATGCTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGCAAGAAGACAGCCCAGCAGATGGTGCTAGACTTGGAAGGCAAAGTAGTGGTTG
CAGATGGTCCGGCAGAAAGCAAGGCACCCGTCCAGACTGCAGAAAATCAGGAGCTGGAGGAAGCTATGGAAGCCATGCTG
GCTTTGGGCTATAAGGCTGCTGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGCACAACTGATACAGCTGAAAACTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

86.294

100

0.867
  ruvA Streptococcus pneumoniae R6

86.294

100

0.867
  ruvA Streptococcus pneumoniae D39

86.294

100

0.867
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.137

100

0.449