Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   FGL22_RS08985 Genome accession   NZ_LR594048
Coordinates   1808484..1810499 (-) Length   671 a.a.
NCBI ID   WP_048327517.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1803484..1815499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL22_RS08965 (NCTC11556_01855) - 1804279..1804731 (+) 453 WP_003052566.1 universal stress protein -
  FGL22_RS08970 (NCTC11556_01856) - 1804894..1806282 (-) 1389 WP_003052568.1 Cof-type HAD-IIB family hydrolase -
  FGL22_RS08975 (NCTC11556_01857) - 1806355..1807320 (+) 966 WP_003053845.1 asparaginase -
  FGL22_RS08980 (NCTC11556_01858) - 1807370..1808287 (-) 918 WP_012767517.1 aldo/keto reductase -
  FGL22_RS08985 (NCTC11556_01859) recG/mmsA 1808484..1810499 (-) 2016 WP_048327517.1 ATP-dependent DNA helicase RecG Machinery gene
  FGL22_RS08990 (NCTC11556_01860) - 1810600..1812054 (-) 1455 WP_048327520.1 ABC transporter ATP-binding protein -
  FGL22_RS08995 (NCTC11556_01861) - 1811991..1812671 (-) 681 WP_003060027.1 energy-coupling factor transporter transmembrane component T -
  FGL22_RS09000 (NCTC11556_01862) - 1812668..1813261 (-) 594 WP_003053895.1 MptD family putative ECF transporter S component -
  FGL22_RS09005 (NCTC11556_01863) - 1813258..1814928 (-) 1671 WP_015058020.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75218.96 Da        Isoelectric Point: 6.5208

>NTDB_id=1006015 FGL22_RS08985 WP_048327517.1 1808484..1810499(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556]
MLLTAPIAHLKGLGPKSAEKFQKLGIYQIEDLLLYYPFRYEDFKSKSVLELLDGEKAVITGTLVTPPNVQYYGFKRNRLT
FKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGKWDQKKTALTGMKLLMTVEDDLQPVYHVAQGVSQTALIKAIKAAFD
SGALDELKENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDYKQALRRIKFEELFYFQLRLQVLKQANRSENSGLAIAFDQE
KINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSGKTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDS
LIKLFPNLSIAILTSGMKAPEKRTALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPD
VLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQAYVISPLIEESEALDLKN
AVDLEAELKAYFKASARIALMHGKMKADEKEAIMRAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLR
GRVGRGHKQSYAILVANPKTESGKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARK
VATMITSEPHWEQQEEWQMVLNYLDTTADFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=1006015 FGL22_RS08985 WP_048327517.1 1808484..1810499(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556]
ATGCTATTAACAGCTCCGATTGCTCACTTAAAAGGCCTAGGACCCAAGTCAGCAGAAAAATTTCAAAAATTAGGTATTTA
TCAGATAGAAGACCTATTGCTCTACTATCCTTTTCGTTATGAAGATTTTAAGAGCAAGTCGGTGTTAGAGCTGTTAGATG
GTGAAAAAGCCGTTATCACAGGAACCCTTGTGACCCCGCCGAATGTACAATATTACGGGTTCAAACGAAACCGACTGACC
TTTAAAATCAAACAAGGAGAAGTGGTGATAGGGGTCAGTTTTTTCAACCAACCCTATTTACAGGATAAATTAACGCTGGG
CAATGAAGTTGCTATTTTTGGAAAATGGGACCAGAAAAAAACAGCTCTAACAGGTATGAAATTGCTGATGACTGTGGAGG
ATGACTTGCAGCCAGTTTATCATGTAGCTCAGGGAGTCAGTCAAACAGCACTCATTAAAGCCATTAAAGCAGCTTTTGAT
AGTGGTGCTTTAGACGAATTGAAAGAGAATATCCCAGATAGTCTTCTTGAGAAATATCGATTAATGCCAAGGCAAGAAGC
AGTTTATGCCATGCATTTTCCTAAAACCTTGACTGACTATAAGCAGGCGTTGAGGCGTATTAAGTTCGAAGAACTCTTTT
ATTTTCAACTGCGACTGCAGGTCTTGAAACAAGCCAATAGGTCAGAAAACAGTGGATTAGCCATCGCATTTGATCAGGAA
AAGATAAATCATCAAATTGCTGCTCTGCCATTTCCTTTAACTCAAGCGCAGGAACGTAGTTTACAGGAAATTTTGAGGGA
TATGCGTTCAGGTGCCCATATGAATCGGCTGTTGCAAGGGGATGTTGGTTCTGGGAAAACAGTTATTGCTAGCCTTGCCA
TGTATGCGGCTTATACAGCAGGGCTTCAATCGGCACTAATGGTACCCACAGAAATTCTGGCTGAGCAGCATTATGATAGT
CTAATCAAGCTTTTTCCGAACCTCTCTATTGCCATTCTGACGTCAGGTATGAAGGCTCCTGAAAAACGGACGGCTTTAGC
GGCCATTGCAGATGGGTCGGTGGATATGATTGTGGGGACCCACGCGCTCATTCAAGATGCTGTTCAATATCACAAATTAG
GGCTTGTTATCACAGATGAGCAACACCGATTTGGAGTGAAACAACGCCGTATTTTCCGCGAAAAAGGTGATAATCCAGAT
GTGCTCATGATGACGGCAACCCCTATTCCAAGGACATTAGCTATTACAGCTTATGGGGAAATGGATGTTTCTATTATTGA
TGAGTTACCAGCTGGTCGAAAACCTATTGTCACTCGTTGGGTTAAGCACCAACAATTGGACACCGTTTTGGCTTGGATGA
AAACGGAACTGGAGCAAGGGGCACAAGCCTATGTGATTTCGCCTTTGATTGAGGAATCTGAAGCTTTGGACCTTAAAAAT
GCTGTGGATTTGGAAGCTGAATTAAAAGCTTATTTTAAAGCATCAGCCCGTATAGCCCTTATGCATGGTAAGATGAAGGC
AGATGAAAAAGAAGCTATTATGCGGGCTTTCAAGGCTCAAGAGATTGATCTCTTGGTGTCAACAACAGTCATTGAAGTCG
GTGTCAATGTTCCCAACGCTAGTATCATGGTCATCATGGATGCGGACCGTTTTGGACTTAGTCAACTGCATCAGCTACGT
GGCCGTGTCGGACGTGGTCACAAGCAGTCCTATGCGATTCTAGTAGCTAATCCTAAAACAGAATCAGGAAAGGAACGCAT
GGCCATTATGACAACAACCAATGATGGTTTTGTTCTTGCTGAGGCAGATCTCAAAATGAGGGGTGCTGGCGAAATATTTG
GAACCCGCCAATCAGGTCTTCCCGAATTTAAAACCGCAGATATTGTAGAGGACTACGCGATTCTGGAAGAAGCTCGCAAA
GTAGCGACGATGATTACCTCAGAGCCTCACTGGGAGCAACAGGAAGAATGGCAGATGGTGCTGAATTACCTTGACACGAC
GGCAGACTTTGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(254-411)

Helicase conserved C-terminal domain (Helicase_C)

(455-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-664)

RecG wedge domain (RecG_wedge)

(6-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

68.852

100

0.689
  recG/mmsA Streptococcus pneumoniae R36A

68.852

100

0.689
  recG Bacillus subtilis subsp. subtilis str. 168

51.908

97.615

0.507
  recG Neisseria meningitidis strain C311

39.726

97.914

0.389

Multiple sequence alignment