Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QUD44_RS02125 Genome accession   NZ_AP027275
Coordinates   430224..430628 (+) Length   134 a.a.
NCBI ID   WP_286210756.1    Uniprot ID   -
Organism   Lactococcus formosensis strain MS200408A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425224..435628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS02110 (LFMS200408A_04090) - 426867..428042 (+) 1176 WP_096368625.1 SLC13 family permease -
  QUD44_RS02115 (LFMS200408A_04100) - 428100..428741 (+) 642 WP_096368624.1 helix-hairpin-helix domain-containing protein -
  QUD44_RS02120 (LFMS200408A_04110) - 428761..430257 (+) 1497 WP_286210755.1 ComEC/Rec2 family competence protein -
  QUD44_RS02125 (LFMS200408A_04120) comEC 430224..430628 (+) 405 WP_286210756.1 MBL fold metallo-hydrolase Machinery gene
  QUD44_RS02130 (LFMS200408A_04130) comEC 430629..430970 (+) 342 WP_286210757.1 MBL fold metallo-hydrolase Machinery gene
  QUD44_RS02135 (LFMS200408A_04140) - 431125..431901 (+) 777 WP_185767510.1 alpha/beta hydrolase family protein -
  QUD44_RS02140 (LFMS200408A_04150) - 432097..432312 (+) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  QUD44_RS02145 (LFMS200408A_04160) atpB 432367..433080 (+) 714 WP_017368853.1 F0F1 ATP synthase subunit A -
  QUD44_RS02150 (LFMS200408A_04170) atpF 433094..433600 (+) 507 WP_017368854.1 F0F1 ATP synthase subunit B -
  QUD44_RS02155 (LFMS200408A_04180) - 433615..434142 (+) 528 WP_017368855.1 F0F1 ATP synthase subunit delta -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15139.23 Da        Isoelectric Point: 9.8970

>NTDB_id=100575 QUD44_RS02125 WP_286210756.1 430224..430628(+) (comEC) [Lactococcus formosensis strain MS200408A]
MQDSWNSKNILIDTGGRLKIRTDEHWREGSYKSNAERTLLPYLRARGVSKIDALIVTHPDEDHIGDLKSVAHKVPIKNIY
VSASALEKQIFVKKLSSLKRQIHIVQEGDKIPIFNSYLRLLTTGGEGKSDNDNS

Nucleotide


Download         Length: 405 bp        

>NTDB_id=100575 QUD44_RS02125 WP_286210756.1 430224..430628(+) (comEC) [Lactococcus formosensis strain MS200408A]
TTGCAGGACAGCTGGAACAGTAAAAATATCCTAATAGATACTGGCGGTAGATTAAAGATAAGAACTGATGAGCACTGGAG
GGAAGGAAGCTATAAAAGTAATGCGGAGCGTACACTTCTCCCTTATCTGAGAGCGCGTGGAGTGAGTAAGATAGATGCCC
TGATAGTGACACATCCAGATGAGGATCATATTGGAGACTTGAAGAGTGTAGCTCATAAAGTACCAATAAAAAATATTTAT
GTCTCAGCTAGTGCATTAGAGAAGCAAATTTTTGTGAAAAAACTAAGCAGCTTAAAACGTCAGATTCACATTGTGCAAGA
GGGAGACAAGATTCCCATATTTAACAGCTATCTCCGTCTTTTAACGACAGGAGGTGAAGGAAAAAGCGATAATGATAATT
CTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

48.507

100

0.485
  comEC/celB Streptococcus mitis SK321

42.188

95.522

0.403

Multiple sequence alignment