Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   FGL14_RS09380 Genome accession   NZ_LR594045
Coordinates   1847844..1849859 (-) Length   671 a.a.
NCBI ID   WP_138084023.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842844..1854859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL14_RS09360 (NCTC9413_01936) - 1843639..1844091 (+) 453 WP_003052566.1 universal stress protein -
  FGL14_RS09365 (NCTC9413_01937) - 1844254..1845642 (-) 1389 WP_003052568.1 Cof-type HAD-IIB family hydrolase -
  FGL14_RS09370 (NCTC9413_01938) - 1845715..1846680 (+) 966 WP_138084022.1 asparaginase -
  FGL14_RS09375 (NCTC9413_01939) - 1846730..1847647 (-) 918 WP_012767517.1 aldo/keto reductase -
  FGL14_RS09380 (NCTC9413_01940) recG/mmsA 1847844..1849859 (-) 2016 WP_138084023.1 ATP-dependent DNA helicase RecG Machinery gene
  FGL14_RS09385 (NCTC9413_01941) - 1849960..1851414 (-) 1455 WP_172600579.1 ABC transporter ATP-binding protein -
  FGL14_RS09390 (NCTC9413_01942) - 1851351..1852031 (-) 681 WP_003053889.1 energy-coupling factor transporter transmembrane component T -
  FGL14_RS09395 (NCTC9413_01943) - 1852028..1852621 (-) 594 WP_003053895.1 MptD family putative ECF transporter S component -
  FGL14_RS09400 (NCTC9413_01944) - 1852618..1854288 (-) 1671 WP_138084025.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75202.96 Da        Isoelectric Point: 6.4089

>NTDB_id=1005702 FGL14_RS09380 WP_138084023.1 1847844..1849859(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
MLLTAPIAHLKGLGPKSAEKFQKLGIYQIEDLLLYYPFRYEDFKSKSVLELLDGEKAVITGTLVTPPNVQYYGFKRNRLT
FKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGKWDQKKTALTGMKLLMTVEDDLQPVYHVAQGVSQTALIKAIKAAFD
SGALDELKENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDYKQALRRIKFEELFYFQLRLQVLKQANRSENSGLAIAFDQE
KINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSGKTVIASLGMYAAYTAGLQSALMVPTEILAEQHYDS
LIKLFPNLSIAILTSGMKAPEKRTALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPD
VLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQAYVISPLIEESEALDLKN
AVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLR
GRVGRGHKQSYAILVANPKTESGKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARK
VATMITLEPHWEQQEEWQMVLNYLDTTADFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=1005702 FGL14_RS09380 WP_138084023.1 1847844..1849859(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
ATGCTATTAACAGCTCCGATTGCTCACTTAAAAGGCCTAGGACCCAAGTCAGCAGAAAAATTTCAAAAATTAGGTATTTA
TCAGATAGAAGACCTATTGCTCTACTATCCTTTTCGTTATGAAGATTTTAAGAGCAAGTCGGTGTTAGAGCTGTTAGATG
GTGAAAAAGCCGTTATCACAGGAACCCTTGTGACCCCGCCGAATGTACAATATTACGGGTTCAAACGAAACCGACTGACC
TTTAAAATCAAACAAGGAGAAGTGGTGATAGGGGTCAGTTTTTTCAACCAACCCTATTTACAGGATAAATTAACGCTGGG
CAATGAAGTTGCTATTTTTGGAAAATGGGACCAGAAAAAAACAGCTCTAACAGGTATGAAATTGCTGATGACTGTGGAGG
ATGACTTGCAGCCAGTTTATCATGTAGCTCAGGGAGTCAGTCAAACAGCACTCATTAAAGCCATTAAAGCAGCTTTTGAT
AGTGGTGCTTTAGACGAATTGAAAGAGAATATCCCAGATAGTCTTCTTGAGAAATATCGATTAATGCCAAGGCAAGAAGC
AGTTTATGCCATGCATTTTCCTAAAACCTTGACTGACTATAAGCAGGCGTTGAGGCGTATTAAGTTCGAAGAACTCTTTT
ATTTTCAACTGCGACTGCAGGTCTTGAAACAAGCCAATAGGTCAGAAAACAGTGGATTAGCCATCGCATTTGATCAGGAA
AAGATAAATCATCAAATTGCTGCTCTGCCATTTCCTTTAACTCAAGCGCAGGAACGTAGTTTACAGGAAATTTTGAGGGA
TATGCGTTCAGGTGCCCATATGAATCGGCTGTTGCAAGGGGATGTTGGTTCTGGGAAAACAGTTATTGCTAGCCTTGGCA
TGTATGCGGCTTATACAGCAGGGCTTCAATCGGCACTAATGGTACCCACAGAAATTCTGGCTGAGCAGCATTATGATAGT
CTAATCAAGCTTTTTCCGAACCTCTCTATTGCCATTCTGACGTCAGGTATGAAGGCTCCTGAAAAACGGACGGCTTTAGC
GGCCATTGCAGATGGGTCGGTGGATATGATTGTGGGGACCCACGCGCTCATTCAAGATGCTGTTCAATATCACAAATTAG
GGCTTGTTATCACAGATGAGCAACACCGATTTGGAGTGAAACAACGTCGTATTTTCCGCGAAAAAGGTGATAATCCAGAT
GTGCTCATGATGACGGCAACCCCTATTCCAAGGACATTAGCTATTACAGCTTATGGGGAAATGGATGTTTCTATTATTGA
TGAGTTACCAGCTGGTCGAAAACCTATTGTCACTCGTTGGGTTAAGCACCAACAATTGGACACCGTTTTGGCTTGGATGA
AAACGGAACTGGAGCAAGGGGCACAAGCCTATGTGATTTCGCCTTTGATTGAGGAATCTGAAGCTTTGGACCTTAAAAAT
GCTGTGGATTTGGAAGCTGAATTAAAAGCTTATTTTAAAGCATCAGCCCGTATAGCCCTTATGCATGGTAAGATGAAGGC
AGATGAAAAAGAAGCTATTATGCAGGCTTTCAAGGCTCAAGAGATTGATCTCTTGGTGTCAACAACAGTCATTGAAGTCG
GTGTCAATGTTCCCAACGCTAGTATCATGGTCATCATGGATGCGGACCGTTTTGGACTTAGTCAACTGCATCAGCTACGT
GGCCGTGTCGGACGTGGTCACAAGCAGTCCTATGCGATTCTAGTAGCTAATCCTAAAACAGAATCAGGAAAGGAACGCAT
GGCCATTATGACAACAACCAATGATGGTTTTGTTCTTGCTGAGGCAGATCTCAAAATGAGGGGTGCTGGCGAAATATTTG
GAACCCGCCAATCAGGTCTTCCCGAATTTAAAACCGCAGATATTGTAGAGGACTACGCGATTCTGGAAGAAGCTCGCAAA
GTAGCGACGATGATTACCTTAGAGCCTCACTGGGAGCAACAGGAAGAATGGCAGATGGTGCTGAATTACCTTGACACGAC
GGCAGACTTTGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(254-411)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-663)

Helicase conserved C-terminal domain (Helicase_C)

(455-566)

RecG wedge domain (RecG_wedge)

(6-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

68.703

100

0.687
  recG/mmsA Streptococcus pneumoniae R36A

68.703

100

0.687
  recG Bacillus subtilis subsp. subtilis str. 168

51.45

97.615

0.502
  recG Neisseria meningitidis strain C311

39.908

97.466

0.389

Multiple sequence alignment