Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGL05_RS01350 Genome accession   NZ_LR594044
Coordinates   270544..271050 (+) Length   168 a.a.
NCBI ID   WP_020917424.1    Uniprot ID   A0AB33ANQ2
Organism   Streptococcus lutetiensis strain NCTC8796     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 265544..276050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL05_RS09090 (NCTC8796_00282) - 266517..266786 (+) 270 WP_162261965.1 DNA repair protein -
  FGL05_RS01320 (NCTC8796_00283) lepB 266773..267354 (+) 582 Protein_271 signal peptidase I -
  FGL05_RS01325 (NCTC8796_00284) - 267410..268297 (+) 888 WP_058814222.1 hypothetical protein -
  FGL05_RS01330 (NCTC8796_00285) - 268303..268623 (+) 321 WP_020917426.1 sortase A -
  FGL05_RS01335 (NCTC8796_00286) - 268814..268960 (+) 147 WP_228380491.1 ATP-dependent protease -
  FGL05_RS01340 (NCTC8796_00287) - 269044..269997 (-) 954 WP_111712989.1 IS30 family transposase -
  FGL05_RS01345 (NCTC8796_00288) rpsF 270242..270532 (+) 291 WP_006531977.1 30S ribosomal protein S6 -
  FGL05_RS01350 (NCTC8796_00289) ssbA 270544..271050 (+) 507 WP_020917424.1 single-stranded DNA-binding protein Machinery gene
  FGL05_RS01355 (NCTC8796_00290) rpsR 271111..271350 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  FGL05_RS01360 (NCTC8796_00291) - 271409..272665 (-) 1257 WP_111712988.1 ISL3 family transposase -
  FGL05_RS09295 (NCTC8796_00292) - 272917..273093 (+) 177 WP_231853221.1 hypothetical protein -
  FGL05_RS09300 (NCTC8796_00293) - 273115..273441 (+) 327 WP_228380489.1 hypothetical protein -
  FGL05_RS01370 (NCTC8796_00294) - 273443..273667 (+) 225 WP_043895293.1 helix-turn-helix transcriptional regulator -
  FGL05_RS01375 (NCTC8796_00296) - 273874..274095 (+) 222 WP_111712987.1 hypothetical protein -
  FGL05_RS01380 (NCTC8796_00297) - 274136..274792 (-) 657 WP_020917420.1 DUF1129 family protein -
  FGL05_RS01385 (NCTC8796_00298) - 275066..276010 (-) 945 WP_020917419.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18641.27 Da        Isoelectric Point: 4.7294

>NTDB_id=1005531 FGL05_RS01350 WP_020917424.1 270544..271050(+) (ssbA) [Streptococcus lutetiensis strain NCTC8796]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLVGVTGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSGGSYNGEFNNNSSFGGSSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1005531 FGL05_RS01350 WP_020917424.1 270544..271050(+) (ssbA) [Streptococcus lutetiensis strain NCTC8796]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAATCAAAATGGTGAACGCGAAGCAGATTTTATTAACTGTGTTATTT
GGCGTCAGCAAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGCACATTGGTTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGCCAACGTGTTTACGTAACTGAGGTCGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCTTACAACGGTGAATTTAACAACAATTCATCATTTGGTGGATCTTCTAATGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAACTTTGGTCGTGACGAAAGCCCATTTGGTAATTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33ANQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.112

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

61.765

100

0.625
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.095

0.369