Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   FGL16_RS07815 Genome accession   NZ_LR594043
Coordinates   1473428..1474111 (-) Length   227 a.a.
NCBI ID   WP_014736187.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10237     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1468428..1479111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL16_RS07785 (NCTC10237_01535) - 1468469..1468633 (-) 165 WP_012027521.1 hypothetical protein -
  FGL16_RS07795 (NCTC10237_01536) tnpA 1468939..1469403 (-) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  FGL16_RS07800 (NCTC10237_01537) - 1469578..1471587 (-) 2010 WP_014736186.1 FtsX-like permease family protein -
  FGL16_RS07805 (NCTC10237_01538) - 1471589..1472347 (-) 759 WP_012027523.1 ABC transporter ATP-binding protein -
  FGL16_RS07810 (NCTC10237_01539) - 1472443..1473435 (-) 993 WP_012027524.1 sensor histidine kinase -
  FGL16_RS07815 (NCTC10237_01540) braR 1473428..1474111 (-) 684 WP_014736187.1 response regulator transcription factor Regulator
  FGL16_RS07820 (NCTC10237_01541) - 1474281..1475462 (+) 1182 WP_012775662.1 DUF2974 domain-containing protein -
  FGL16_RS07825 (NCTC10237_01542) - 1475477..1476601 (-) 1125 WP_012027527.1 aminotransferase -
  FGL16_RS07830 (NCTC10237_01543) - 1476748..1477509 (-) 762 WP_012775663.1 nuclear transport factor 2 family protein -
  FGL16_RS07835 (NCTC10237_01544) - 1477519..1479030 (-) 1512 WP_012775664.1 ABC transporter permease/substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26508.75 Da        Isoelectric Point: 4.5525

>NTDB_id=1005490 FGL16_RS07815 WP_014736187.1 1473428..1474111(-) (braR) [Streptococcus suis strain NCTC10237]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLLFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELDLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1005490 FGL16_RS07815 WP_014736187.1 1473428..1474111(-) (braR) [Streptococcus suis strain NCTC10237]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GTCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTTAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTTGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACCCTGTCGGTTAACATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGATCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.706

96.035

0.458
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383