Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ABKA22_RS11160 Genome accession   NZ_CP157287
Coordinates   2212519..2212950 (-) Length   143 a.a.
NCBI ID   WP_080585155.1    Uniprot ID   -
Organism   Lactococcus lactis strain BIM B-1834     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2207519..2217950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS11120 (ABKA22_11120) - 2207524..2208390 (+) 867 WP_003129984.1 RluA family pseudouridine synthase -
  ABKA22_RS11125 (ABKA22_11125) - 2208429..2209238 (-) 810 WP_014570791.1 metal ABC transporter permease -
  ABKA22_RS11130 (ABKA22_11130) - 2209231..2209968 (-) 738 WP_058221575.1 metal ABC transporter ATP-binding protein -
  ABKA22_RS11135 (ABKA22_11135) - 2210145..2210987 (-) 843 WP_251906093.1 metal ABC transporter substrate-binding protein -
  ABKA22_RS11140 (ABKA22_11140) - 2210984..2211421 (-) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  ABKA22_RS11145 (ABKA22_11145) comGG 2211519..2211803 (-) 285 WP_003129993.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABKA22_RS11150 (ABKA22_11150) comGF 2211842..2212288 (-) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABKA22_RS11155 (ABKA22_11155) comGE 2212251..2212547 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABKA22_RS11160 (ABKA22_11160) comGD 2212519..2212950 (-) 432 WP_080585155.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABKA22_RS11165 (ABKA22_11165) comGC 2212910..2213206 (-) 297 WP_212715809.1 competence type IV pilus major pilin ComGC Machinery gene
  ABKA22_RS11175 (ABKA22_11175) - 2213579..2213644 (-) 66 WP_228762923.1 hypothetical protein -
  ABKA22_RS11180 (ABKA22_11180) - 2214119..2214898 (-) 780 WP_348619035.1 peptidoglycan amidohydrolase family protein -
  ABKA22_RS11185 (ABKA22_11185) - 2214898..2215197 (-) 300 WP_010905918.1 phage holin -
  ABKA22_RS11190 (ABKA22_11190) - 2215210..2215434 (-) 225 WP_023189750.1 hemolysin XhlA family protein -
  ABKA22_RS11195 (ABKA22_11195) - 2215447..2215683 (-) 237 WP_025017282.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16534.53 Da        Isoelectric Point: 9.6891

>NTDB_id=1005457 ABKA22_RS11160 WP_080585155.1 2212519..2212950(-) (comGD) [Lactococcus lactis strain BIM B-1834]
MIRTKMKNEILMTRAFTLLESLLVLLIISFITTLFSLEIIQTVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQ
ELICEDRSITIPKEVAVKDFTVKFDDKGGNSSLQKLTIFLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1005457 ABKA22_RS11160 WP_080585155.1 2212519..2212950(-) (comGD) [Lactococcus lactis strain BIM B-1834]
ATGATCAGAACAAAAATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGAT
TATTTCTTTTATCACAACTCTTTTTTCTTTAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAACTGTTTGTTCTCC
AGTTTGAAAATTTCTATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAA
GAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAA
GGGAGGGAATTCTAGCTTACAAAAACTCACAATTTTTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAG
GCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

66.434

100

0.664
  comYD Streptococcus gordonii str. Challis substr. CH1

39.716

98.601

0.392
  comYD Streptococcus mutans UA140

40.625

89.51

0.364
  comYD Streptococcus mutans UA159

40.625

89.51

0.364

Multiple sequence alignment