Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AAG688_RS14790 Genome accession   NZ_CP157201
Coordinates   3196969..3198372 (+) Length   467 a.a.
NCBI ID   WP_411832951.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain SDU_PSEU2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3191969..3203372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG688_RS14760 pssA 3192200..3192976 (-) 777 WP_411832946.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  AAG688_RS14765 - 3193077..3193472 (+) 396 WP_411832947.1 DUF4124 domain-containing protein -
  AAG688_RS14770 - 3193650..3194072 (+) 423 WP_411832948.1 hypothetical protein -
  AAG688_RS14775 - 3194072..3194356 (+) 285 WP_411832949.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AAG688_RS14780 - 3194507..3196207 (+) 1701 WP_411832950.1 proline--tRNA ligase -
  AAG688_RS14785 - 3196340..3196699 (+) 360 Protein_2898 H-NS family nucleoid-associated regulatory protein -
  AAG688_RS14790 pilR 3196969..3198372 (+) 1404 WP_411832951.1 sigma-54-dependent transcriptional regulator Regulator
  AAG688_RS14795 - 3198746..3199141 (+) 396 WP_411832952.1 pilin -
  AAG688_RS14800 - 3199216..3199662 (+) 447 WP_411832953.1 pilin -
  AAG688_RS14805 pilB 3199700..3201430 (+) 1731 WP_411832954.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAG688_RS14810 pilC 3201771..3203045 (+) 1275 WP_411832955.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 50843.14 Da        Isoelectric Point: 6.2996

>NTDB_id=1004582 AAG688_RS14790 WP_411832951.1 3196969..3198372(+) (pilR) [Pseudoxanthomonas mexicana strain SDU_PSEU2]
MSQNRSALIVDDERDIRELLTLTLGRMGLRIDTASNLGEARELLSRNRYDLCFTDMRLPDGNGIDLVGEIARLYPQTPVA
MITAFGNIELAVEALKAGAFDFVSKPVDLTVLRGLVKHALELSNTERSPPAIPPPEHASRLLGTSPAMIALRETIAKVAR
SQAPVYIMGESGTGKELVARTIHEQGARASGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKAGLFQAAHGGTLFLD
EVAELPLTMQVKLLRAIQEKAVRPVGASGEVQVDVRILSATHKDLGELANDGRFRHDLYYRINVIELRVPPLRERTGDLP
QLTSAILERLAEQHGRNPPSVSPDAMAALGRYGFPGNVRELENILERALAMSEGHGIEIDDLYLPQHNPQARKFGGDFGN
GEVVPDAPGAIDIDPAGGALPSYIEQLERAAIQKALEDNRWNKTRAAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=1004582 AAG688_RS14790 WP_411832951.1 3196969..3198372(+) (pilR) [Pseudoxanthomonas mexicana strain SDU_PSEU2]
ATGAGCCAAAACCGCAGCGCCCTTATCGTCGACGACGAGCGCGACATCCGCGAACTGCTGACACTGACCCTGGGCCGCAT
GGGCCTGCGCATCGACACCGCCTCCAACCTCGGCGAGGCCCGCGAGCTGCTGTCGCGCAACCGCTACGACCTCTGCTTCA
CCGACATGCGCCTGCCTGACGGCAACGGCATCGACCTGGTCGGGGAAATCGCCCGCCTCTACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAACATCGAGCTGGCGGTCGAGGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACCTGACCGTGCTGCGCGGGCTGGTCAAGCACGCCCTGGAACTGAGCAACACCGAGCGCAGCCCGCCCGCCATCCCGC
CGCCCGAGCACGCCAGCCGCCTGCTCGGCACCAGCCCGGCCATGATCGCCCTGCGCGAGACCATCGCCAAGGTCGCTCGC
AGCCAGGCGCCGGTCTACATCATGGGCGAGTCCGGCACCGGCAAGGAACTGGTCGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCCTCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACAAGGCCGGCCTGTTCCAGGCCGCCCACGGCGGCACCCTGTTCCTGGAC
GAGGTCGCCGAACTGCCGCTGACCATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAGGCCGTGCGCCCGGTCGGCGC
CTCCGGCGAGGTGCAGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGGCGAACTGGCCAACGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAGTTGCGCGTGCCGCCGCTGCGCGAGCGCACCGGCGACCTGCCG
CAGCTGACCAGCGCCATCCTCGAACGGCTGGCCGAGCAGCACGGCCGCAACCCGCCCTCGGTCTCGCCCGACGCGATGGC
CGCGCTGGGCCGCTACGGCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAGCGCGCGCTGGCCATGTCCGAAG
GCCACGGCATCGAGATCGACGACCTCTACCTGCCCCAGCACAACCCGCAGGCCAGGAAGTTCGGCGGCGACTTCGGCAAC
GGCGAGGTCGTGCCCGACGCGCCCGGCGCCATCGACATCGACCCGGCCGGCGGCGCCCTGCCCTCCTACATCGAGCAACT
GGAGCGCGCCGCCATCCAGAAGGCCTTGGAAGACAACCGCTGGAACAAGACCCGCGCCGCCGCCCAGCTCGGCATCACCT
TCCGGGCGTTGCGCTACAAGCTCAAGAAGCTGGGGATGGAATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.722

100

0.612
  pilR Acinetobacter baumannii strain A118

47.527

99.572

0.473

Multiple sequence alignment