Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABHF54_RS04485 Genome accession   NZ_CP157069
Coordinates   936573..936941 (-) Length   122 a.a.
NCBI ID   WP_281870618.1    Uniprot ID   -
Organism   Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 931573..941941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF54_RS04465 (ABHF54_04460) - 932859..933347 (+) 489 WP_347888781.1 hypothetical protein -
  ABHF54_RS04470 (ABHF54_04465) ubiD 933439..934902 (-) 1464 WP_347888782.1 4-hydroxy-3-polyprenylbenzoate decarboxylase -
  ABHF54_RS04475 (ABHF54_04470) ubiA 934973..935851 (-) 879 WP_281870617.1 4-hydroxybenzoate octaprenyltransferase -
  ABHF54_RS04480 (ABHF54_04475) - 935940..936476 (-) 537 WP_011112379.1 chorismate lyase -
  ABHF54_RS04485 (ABHF54_04480) pilG 936573..936941 (-) 369 WP_281870618.1 response regulator Regulator
  ABHF54_RS04490 (ABHF54_04485) - 937099..938568 (-) 1470 WP_347888783.1 potassium transporter TrkG -
  ABHF54_RS04495 (ABHF54_04490) trkA 938578..940023 (-) 1446 WP_287398310.1 Trk system potassium transporter TrkA -
  ABHF54_RS04500 (ABHF54_04495) - 940302..941576 (-) 1275 WP_347888784.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13708.95 Da        Isoelectric Point: 7.7745

>NTDB_id=1003936 ABHF54_RS04485 WP_281870618.1 936573..936941(-) (pilG) [Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf]
MVVDDSNTIRRSAEIFLAHSGCEVILATDGFDAMAKVIDCQPDIIFLDIVMPRLDGYQACMLIKKNPRYQSVPVIMLSSK
SGLFDRARGRMVGSDEYLTKPFTKEALLDTVRKHTSHYRVPA

Nucleotide


Download         Length: 369 bp        

>NTDB_id=1003936 ABHF54_RS04485 WP_281870618.1 936573..936941(-) (pilG) [Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf]
ATGGTGGTTGATGACAGCAATACCATCCGGCGCAGCGCGGAAATTTTTCTCGCACACTCCGGCTGCGAGGTCATTCTGGC
TACAGATGGATTTGATGCAATGGCCAAGGTCATCGACTGTCAGCCGGATATCATTTTTCTGGATATCGTCATGCCACGGC
TGGATGGCTACCAGGCCTGTATGCTGATCAAAAAGAACCCCAGATATCAGTCTGTGCCAGTGATCATGCTCTCCAGCAAG
AGCGGATTGTTCGATCGCGCGCGCGGCAGAATGGTCGGCTCTGATGAATATCTTACCAAGCCGTTTACCAAAGAAGCACT
GCTCGACACGGTACGTAAACATACTTCACACTACCGGGTACCGGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

64.655

95.082

0.615
  pilH Synechocystis sp. PCC 6803

41.593

92.623

0.385
  vicR Streptococcus mutans UA159

39.474

93.443

0.369

Multiple sequence alignment