Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABGT20_RS12605 Genome accession   NZ_CP157038
Coordinates   2347663..2347998 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain AR01-03     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2342663..2352998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT20_RS12585 (ABGT20_12585) gcvT 2343255..2344343 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  ABGT20_RS12590 (ABGT20_12590) yqhH 2344785..2346458 (+) 1674 WP_014480248.1 SNF2-related protein -
  ABGT20_RS12595 (ABGT20_12595) yqhG 2346479..2347273 (+) 795 WP_014480249.1 YqhG family protein -
  ABGT20_RS12600 (ABGT20_12600) sinI 2347456..2347629 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  ABGT20_RS12605 (ABGT20_12605) sinR 2347663..2347998 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ABGT20_RS12610 (ABGT20_12610) tasA 2348091..2348876 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  ABGT20_RS12615 (ABGT20_12615) sipW 2348940..2349512 (-) 573 WP_003230181.1 signal peptidase I -
  ABGT20_RS12620 (ABGT20_12620) tapA 2349496..2350257 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  ABGT20_RS12625 (ABGT20_12625) yqzG 2350529..2350855 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ABGT20_RS12630 (ABGT20_12630) spoIIT 2350897..2351076 (-) 180 WP_014480252.1 YqzE family protein -
  ABGT20_RS12635 (ABGT20_12635) comGG 2351147..2351521 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  ABGT20_RS12640 (ABGT20_12640) comGF 2351522..2351905 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  ABGT20_RS12645 (ABGT20_12645) comGE 2351931..2352278 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  ABGT20_RS12650 (ABGT20_12650) comGD 2352262..2352693 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  ABGT20_RS12655 (ABGT20_12655) comGC 2352683..2352979 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1003886 ABGT20_RS12605 WP_003226345.1 2347663..2347998(+) (sinR) [Bacillus subtilis strain AR01-03]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1003886 ABGT20_RS12605 WP_003226345.1 2347663..2347998(+) (sinR) [Bacillus subtilis strain AR01-03]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment