Detailed information NTG1003396

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABHM42_RS06145
• Genome accession: NZ_CP156941
• Coordinates: 1342324..1343661 (-)
• Length: 445 a.a.
• NCBI ID: WP_003110427.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 2024CK-00455
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1337324..1348661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHM42_RS06115 (ABHM42_06115)	-	1337973..1338578 (-)	606	WP_003116263.1	pilus assembly protein	-
ABHM42_RS06120 (ABHM42_06120)	-	1338575..1339390 (-)	816	WP_016562347.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ABHM42_RS06125 (ABHM42_06125)	pilV	1339399..1339923 (-)	525	WP_003116261.1	type IV pilus modification protein PilV	Machinery gene
ABHM42_RS06130 (ABHM42_06130)	-	1339933..1340421 (-)	489	WP_003141552.1	GspH/FimT family pseudopilin	-
ABHM42_RS06135 (ABHM42_06135)	-	1340544..1341044 (-)	501	WP_023435614.1	GspH/FimT family pseudopilin	-
ABHM42_RS06140 (ABHM42_06140)	thiO	1341184..1342278 (+)	1095	WP_023435615.1	glycine oxidase ThiO	-
ABHM42_RS06145 (ABHM42_06145)	pilR	1342324..1343661 (-)	1338	WP_003110427.1	two-component system response regulator PilR	Regulator
ABHM42_RS06150 (ABHM42_06150)	pilS	1343676..1345268 (-)	1593	WP_285230726.1	two-component system sensor histidine kinase PilS	Regulator
ABHM42_RS06155 (ABHM42_06155)	-	1345258..1345503 (-)	246	WP_003102591.1	PP0621 family protein	-
ABHM42_RS06160 (ABHM42_06160)	-	1345660..1346685 (-)	1026	WP_003102590.1	outer membrane protein assembly factor BamD	-
ABHM42_RS06165 (ABHM42_06165)	rluD	1346831..1347793 (+)	963	WP_003094686.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ABHM42_RS06170 (ABHM42_06170)	pgeF	1347790..1348518 (+)	729	WP_023435616.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49723.03 Da
• Isoelectric Point: 5.8638

>NTDB_id=1003396 ABHM42_RS06145 WP_003110427.1 1342324..1343661(-) (pilR) [Pseudomonas aeruginosa strain 2024CK-00455]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1338 bp

>NTDB_id=1003396 ABHM42_RS06145 WP_003110427.1 1342324..1343661(-) (pilR) [Pseudomonas aeruginosa strain 2024CK-00455]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GTGCTATCGAAGACAAGCAGGGCCTGTTCCAAGCCGCCAGCGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAGAATATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTATCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	99.775	100	0.998
pilR	Acinetobacter baumannii strain A118	51.198	100	0.528
luxO	Vibrio cholerae strain A1552	38.17	100	0.384