Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   EL267_RS02240 Genome accession   NZ_LR134520
Coordinates   413130..413639 (+) Length   169 a.a.
NCBI ID   WP_000392202.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NCTC13947     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 408130..418639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL267_RS02215 (NCTC13947_00435) - 408149..409018 (+) 870 WP_000858929.1 5'-nucleotidase, lipoprotein e(P4) family -
  EL267_RS02220 (NCTC13947_00436) - 409153..410349 (+) 1197 WP_001096753.1 phosphoglycerate kinase -
  EL267_RS02225 (NCTC13947_00437) - 410612..411151 (+) 540 WP_000854121.1 FUSC family protein -
  EL267_RS02230 (NCTC13947_00438) - 411231..411602 (+) 372 WP_000664338.1 MerR family transcriptional regulator -
  EL267_RS02235 (NCTC13947_00439) glnA 411636..412982 (+) 1347 WP_000156225.1 type I glutamate--ammonia ligase -
  EL267_RS02240 (NCTC13947_00440) lytF 413130..413639 (+) 510 WP_000392202.1 CHAP domain-containing protein Regulator
  EL267_RS02245 (NCTC13947_00441) rnjA 413801..415480 (-) 1680 WP_000065497.1 ribonuclease J1 -
  EL267_RS02250 (NCTC13947_00442) - 415534..415764 (-) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  EL267_RS02255 (NCTC13947_00443) tsaB 415943..416635 (+) 693 WP_000978606.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  EL267_RS02260 (NCTC13947_00444) rimI 416637..417044 (+) 408 WP_000445943.1 ribosomal protein S18-alanine N-acetyltransferase -
  EL267_RS02265 (NCTC13947_00445) tsaD 417120..418130 (+) 1011 WP_017649359.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18332.26 Da        Isoelectric Point: 4.4055

>NTDB_id=1003326 EL267_RS02240 WP_000392202.1 413130..413639(+) (lytF) [Streptococcus agalactiae strain NCTC13947]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1003326 EL267_RS02240 WP_000392202.1 413130..413639(+) (lytF) [Streptococcus agalactiae strain NCTC13947]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTAACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414

Multiple sequence alignment