Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EL256_RS04035 Genome accession   NZ_LR134517
Coordinates   845793..846344 (-) Length   183 a.a.
NCBI ID   WP_126442752.1    Uniprot ID   -
Organism   Helicobacter pylori strain NCTC13345     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 840793..851344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL256_RS04000 (NCTC13345_00794) rpmB 841196..841384 (+) 189 WP_001118998.1 50S ribosomal protein L28 -
  EL256_RS04010 (NCTC13345_00795) - 841571..842707 (+) 1137 WP_021173963.1 potassium channel family protein -
  EL256_RS08275 - 842925..843050 (-) 126 Protein_760 DUF1542 domain-containing protein -
  EL256_RS08490 - 843198..843394 (-) 197 Protein_761 hypothetical protein -
  EL256_RS04025 (NCTC13345_00798) - 843444..845494 (-) 2051 Protein_762 DUF3519 domain-containing protein -
  EL256_RS04030 - 845557..845784 (+) 228 WP_126442751.1 hypothetical protein -
  EL256_RS04035 (NCTC13345_00799) ruvA 845793..846344 (-) 552 WP_126442752.1 Holliday junction branch migration protein RuvA Machinery gene
  EL256_RS04040 (NCTC13345_00800) - 846370..848214 (-) 1845 WP_126442753.1 hypothetical protein -
  EL256_RS04045 (NCTC13345_00801) murJ 848307..849767 (+) 1461 WP_126442755.1 murein biosynthesis integral membrane protein MurJ -
  EL256_RS04050 (NCTC13345_00802) cysS 849768..851165 (+) 1398 WP_126442757.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20256.92 Da        Isoelectric Point: 9.7671

>NTDB_id=1003249 EL256_RS04035 WP_126442752.1 845793..846344(-) (ruvA) [Helicobacter pylori strain NCTC13345]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSTEINKV
LKTLKPHLSIEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1003249 EL256_RS04035 WP_126442752.1 845793..846344(-) (ruvA) [Helicobacter pylori strain NCTC13345]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACGGCCGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTGCAAGTGATTAAAG
AAGACGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTTTTTGAAAGGCTTTTGAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAACGAATTTGAAAACATTATCGCTACCAAAGAAGTTAA
AAGACTCCAGCAAGTCCCAGGTATAGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAAACAGACCCGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACCGAAATCAATAAAGTC
TTAAAAACCCTAAAACCCCATCTCAGCATAGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(139-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

96.175

100

0.962
  ruvA Streptococcus pneumoniae TIGR4

34.359

100

0.366
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366

Multiple sequence alignment