Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ABHI22_RS14260 Genome accession   NZ_CP156909
Coordinates   3327252..3327371 (-) Length   39 a.a.
NCBI ID   WP_033482837.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain CFBP 9184     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3322252..3332371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHI22_RS14245 (ABHI22_14260) - 3323431..3325044 (+) 1614 WP_003488599.1 PAS domain-containing sensor histidine kinase -
  ABHI22_RS14250 (ABHI22_14265) pilR 3325373..3326767 (+) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator
  ABHI22_RS14255 (ABHI22_14270) - 3326965..3327120 (-) 156 WP_003488595.1 hypothetical protein -
  ABHI22_RS14260 (ABHI22_14275) pilB 3327252..3327371 (-) 120 WP_033482837.1 hypothetical protein Machinery gene
  ABHI22_RS14265 (ABHI22_14280) pilB 3327468..3329204 (-) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABHI22_RS14270 (ABHI22_14285) pilA2 3329246..3329659 (-) 414 WP_005921365.1 pilin Machinery gene
  ABHI22_RS14275 (ABHI22_14290) comP 3329756..3330184 (-) 429 WP_005921364.1 pilin Machinery gene
  ABHI22_RS14280 (ABHI22_14295) pilC 3330529..3331788 (+) 1260 WP_033483308.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4205.86 Da        Isoelectric Point: 9.0113

>NTDB_id=1003170 ABHI22_RS14260 WP_033482837.1 3327252..3327371(-) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 9184]
MQIAEAAQAIGIRDLRQSALMKAAHGVTNLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1003170 ABHI22_RS14260 WP_033482837.1 3327252..3327371(-) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 9184]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAACCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

48.718

100

0.487
  pilB Acinetobacter baumannii D1279779

46.154

100

0.462
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385
  pilB Vibrio cholerae strain A1552

42.857

89.744

0.385

Multiple sequence alignment