Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ECRM13516_RS20670 Genome accession   NZ_CP006262
Coordinates   4043878..4044510 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli O145:H28 str. RM13516     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4038878..4049510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRM13516_RS20640 (ECRM13516_4096) yheS 4039047..4040960 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  ECRM13516_RS20645 (ECRM13516_4097) yheT 4040960..4041982 (+) 1023 WP_000057365.1 hydrolase -
  ECRM13516_RS20650 (ECRM13516_4098) yheU 4041976..4042194 (+) 219 WP_000907085.1 YheU family protein -
  ECRM13516_RS20655 (ECRM13516_4099) prkB 4042248..4043117 (+) 870 WP_001274680.1 phosphoribulokinase -
  ECRM13516_RS20660 (ECRM13516_4100) yhfA 4043172..4043576 (-) 405 WP_001148912.1 OsmC family protein -
  ECRM13516_RS20670 (ECRM13516_4101) crp 4043878..4044510 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  ECRM13516_RS20675 (ECRM13516_4102) yhfK 4044561..4046651 (+) 2091 WP_001400404.1 YccS/YhfK family putative transporter -
  ECRM13516_RS20680 (ECRM13516_4103) argD 4046718..4047938 (-) 1221 WP_000963777.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  ECRM13516_RS20685 (ECRM13516_4104) pabA 4048024..4048587 (-) 564 WP_000601869.1 aminodeoxychorismate synthase component 2 -
  ECRM13516_RS20690 (ECRM13516_4105) fic 4048619..4049221 (-) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  ECRM13516_RS20695 (ECRM13516_4106) yhfG 4049211..4049378 (-) 168 WP_000736862.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=100298 ECRM13516_RS20670 WP_000242755.1 4043878..4044510(+) (crp) [Escherichia coli O145:H28 str. RM13516]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=100298 ECRM13516_RS20670 WP_000242755.1 4043878..4044510(+) (crp) [Escherichia coli O145:H28 str. RM13516]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTCAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment