Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABEF84_RS01700 Genome accession   NZ_CP156795
Coordinates   352880..353599 (+) Length   239 a.a.
NCBI ID   WP_404798971.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7912     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347880..358599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF84_RS01685 (ABEF84_01685) ponA 348483..351014 (-) 2532 WP_347473745.1 penicillin-binding protein PBP1a -
  ABEF84_RS01690 (ABEF84_01690) pilM 351181..352239 (+) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene
  ABEF84_RS01695 (ABEF84_01695) pilN 352239..352883 (+) 645 WP_347473746.1 PilN domain-containing protein Machinery gene
  ABEF84_RS01700 (ABEF84_01700) comO 352880..353599 (+) 720 WP_404798971.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF84_RS01705 (ABEF84_01705) pilP 353599..354126 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF84_RS01710 (ABEF84_01710) pilQ 354143..356317 (+) 2175 WP_347473747.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF84_RS01715 (ABEF84_01715) aroK 356354..356890 (+) 537 WP_034585528.1 shikimate kinase AroK -
  ABEF84_RS01720 (ABEF84_01720) aroB 356919..357998 (+) 1080 WP_347454500.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26998.54 Da        Isoelectric Point: 4.7422

>NTDB_id=1002877 ABEF84_RS01700 WP_404798971.1 352880..353599(+) (comO) [Acinetobacter thermotolerans strain ANC 7912]
MSEKFEDLGQESVVAPKNKMTVEKFFQQFNTLDPNNYGSWPIAVKITCWIFIVFVVMMLAYFGLIRGQIEAIAQANAQEQ
NLLNEFRDKDSKLRNLQQYQQQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQPI
SIEATGDYHSFGSFVSGIAGLSRIVTLHDFEITGTANKEKKTDIPVIDYVVKAKTYRYVGNANTNSTADNTAANGQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1002877 ABEF84_RS01700 WP_404798971.1 352880..353599(+) (comO) [Acinetobacter thermotolerans strain ANC 7912]
ATGAGCGAAAAATTTGAAGATTTAGGTCAAGAGTCAGTTGTTGCACCGAAAAATAAAATGACGGTGGAGAAGTTTTTCCA
GCAGTTTAATACCCTGGATCCAAATAATTATGGTAGCTGGCCGATCGCAGTTAAAATTACCTGCTGGATTTTTATTGTCT
TTGTGGTAATGATGCTGGCTTATTTTGGTTTGATCCGCGGCCAAATCGAAGCCATTGCACAAGCGAATGCTCAGGAGCAA
AACTTGCTCAATGAGTTCCGTGATAAGGATTCCAAGCTGCGTAACTTGCAACAATATCAGCAACAATTGCAGGAAATGGA
AGCGCGTTTTAACCAGCAACTCGAGCAGTTGCCGAAAGAAACAGAAATTCCTGGATTGGTTGAAGATATTAACTTGAGCG
GTGTCAACGCCGGCCTGAAGTTCAAAAATATCCGTCTTGAACCTGAAGTGAAGCAGGAATTCTTTATTGAGCAACCGATC
TCGATTGAAGCAACAGGTGATTATCATTCTTTTGGTTCATTTGTTAGTGGTATTGCAGGTCTGTCACGTATCGTGACACT
GCATGATTTTGAAATTACTGGTACGGCAAACAAAGAGAAGAAAACTGATATTCCAGTGATTGATTATGTGGTGAAAGCAA
AAACTTATCGCTATGTAGGAAACGCTAATACTAATAGTACAGCAGATAATACAGCTGCAAACGGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

66.805

100

0.674
  pilO Acinetobacter baumannii D1279779

69.058

93.305

0.644

Multiple sequence alignment