Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABEF84_RS01695 Genome accession   NZ_CP156795
Coordinates   352239..352883 (+) Length   214 a.a.
NCBI ID   WP_347473746.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7912     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347239..357883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF84_RS01685 (ABEF84_01685) ponA 348483..351014 (-) 2532 WP_347473745.1 penicillin-binding protein PBP1a -
  ABEF84_RS01690 (ABEF84_01690) pilM 351181..352239 (+) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene
  ABEF84_RS01695 (ABEF84_01695) pilN 352239..352883 (+) 645 WP_347473746.1 PilN domain-containing protein Machinery gene
  ABEF84_RS01700 (ABEF84_01700) comO 352880..353599 (+) 720 WP_404798971.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF84_RS01705 (ABEF84_01705) pilP 353599..354126 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF84_RS01710 (ABEF84_01710) pilQ 354143..356317 (+) 2175 WP_347473747.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF84_RS01715 (ABEF84_01715) aroK 356354..356890 (+) 537 WP_034585528.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23960.20 Da        Isoelectric Point: 4.7839

>NTDB_id=1002876 ABEF84_RS01695 WP_347473746.1 352239..352883(+) (pilN) [Acinetobacter thermotolerans strain ANC 7912]
MAKINLLPWRDELRVKRNNEFIAYCVGALLLGVAAAGGGWFYYDQKLQDQEQANQLIISTNQNLDVQLKSLDGLQEQRDA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSDMYVTKFVRTGDKFTIEGKAASPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKAPSSLIPRIEESYGTFTVTVDLDQIAQPVLSEQQPQAAETTTQGATS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1002876 ABEF84_RS01695 WP_347473746.1 352239..352883(+) (pilN) [Acinetobacter thermotolerans strain ANC 7912]
ATGGCAAAAATTAATCTATTGCCTTGGCGTGATGAGCTAAGAGTCAAAAGAAATAATGAATTTATCGCATATTGCGTGGG
GGCTTTGTTGCTCGGTGTGGCAGCAGCAGGGGGTGGTTGGTTCTATTACGATCAGAAATTACAGGATCAGGAACAGGCTA
ATCAGTTAATTATTAGTACCAACCAGAATCTGGATGTGCAGCTGAAATCATTGGATGGTTTGCAAGAGCAGCGTGATGCG
ATTGTAGAGCGTATGAAACTGATTCAGGGCTTGCAAACCCAGCGTCCGATTGCGGTGCATCTTATTGATGAAATTGTGCG
GGTAACGCCAAGTGATATGTATGTCACCAAGTTTGTACGTACCGGGGATAAGTTCACGATTGAAGGCAAGGCTGCAAGTC
CAAATACCGTGGCAGAGTTGCTTCGTAATCTGGAAGCCTCTCCTTGGTATCGCAATGCATTTATGAATTCGTTCCTGGCA
GCGGAAGAGAAGAAGGATAAAGCACCAAGTTCTCTGATTCCGCGTATTGAAGAGTCTTATGGAACGTTCACAGTAACTGT
TGATCTTGACCAGATTGCTCAGCCTGTGCTTTCCGAGCAGCAACCACAGGCAGCTGAGACAACTACACAGGGGGCGACAT
CATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

75.13

90.187

0.678
  comN Acinetobacter baylyi ADP1

70.048

96.729

0.678

Multiple sequence alignment