Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | ABEF87_RS01890 | Genome accession | NZ_CP156789 |
| Coordinates | 390840..391286 (+) | Length | 148 a.a. |
| NCBI ID | WP_347453518.1 | Uniprot ID | - |
| Organism | Acinetobacter thermotolerans strain ANC 7919 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 372967..432093 | 390840..391286 | within | 0 |
Gene organization within MGE regions
Location: 372967..432093
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEF87_RS01820 (ABEF87_01820) | - | 372967..376590 (+) | 3624 | WP_347455484.1 | fused MFS/spermidine synthase | - |
| ABEF87_RS01825 (ABEF87_01825) | - | 376706..378340 (+) | 1635 | WP_347455485.1 | Wzy polymerase domain-containing protein | - |
| ABEF87_RS01830 (ABEF87_01830) | bfr | 378395..378859 (-) | 465 | WP_347453508.1 | bacterioferritin | - |
| ABEF87_RS01835 (ABEF87_01835) | - | 379101..379295 (-) | 195 | WP_347453509.1 | bacterioferritin-associated ferredoxin | - |
| ABEF87_RS01840 (ABEF87_01840) | - | 379484..379867 (-) | 384 | WP_347453510.1 | RidA family protein | - |
| ABEF87_RS01845 (ABEF87_01845) | - | 379943..382045 (-) | 2103 | WP_347455486.1 | HD domain-containing protein | - |
| ABEF87_RS01850 (ABEF87_01850) | rpoZ | 382257..382538 (-) | 282 | WP_034587719.1 | DNA-directed RNA polymerase subunit omega | - |
| ABEF87_RS01855 (ABEF87_01855) | gmk | 382613..383236 (-) | 624 | WP_347453512.1 | guanylate kinase | - |
| ABEF87_RS01860 (ABEF87_01860) | ispH | 383371..384321 (+) | 951 | WP_347453513.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| ABEF87_RS01865 (ABEF87_01865) | - | 384486..384932 (+) | 447 | WP_347453514.1 | GspH/FimT family pseudopilin | - |
| ABEF87_RS01870 (ABEF87_01870) | pilV | 384932..385441 (+) | 510 | WP_180016635.1 | type IV pilus modification protein PilV | - |
| ABEF87_RS01875 (ABEF87_01875) | - | 385443..386465 (+) | 1023 | WP_347455487.1 | PilW family protein | - |
| ABEF87_RS01880 (ABEF87_01880) | - | 386462..387229 (+) | 768 | WP_347455488.1 | pilus assembly protein PilX | - |
| ABEF87_RS01885 (ABEF87_01885) | - | 387245..390829 (+) | 3585 | WP_347455489.1 | pilus assembly protein PilY | - |
| ABEF87_RS01890 (ABEF87_01890) | comE | 390840..391286 (+) | 447 | WP_347453518.1 | type IV pilin protein | Machinery gene |
| ABEF87_RS01895 (ABEF87_01895) | - | 391280..391774 (+) | 495 | WP_347453519.1 | type IV pilin protein | - |
| ABEF87_RS01900 (ABEF87_01900) | rpsP | 391900..392157 (+) | 258 | WP_034587736.1 | 30S ribosomal protein S16 | - |
| ABEF87_RS01905 (ABEF87_01905) | rimM | 392187..392735 (+) | 549 | WP_034587737.1 | ribosome maturation factor RimM | - |
| ABEF87_RS01910 (ABEF87_01910) | trmD | 392777..393526 (+) | 750 | WP_347455490.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ABEF87_RS01915 (ABEF87_01915) | rplS | 393703..394074 (+) | 372 | WP_004787066.1 | 50S ribosomal protein L19 | - |
| ABEF87_RS01920 (ABEF87_01920) | - | 394136..395119 (-) | 984 | WP_034587797.1 | triacylglycerol lipase | - |
| ABEF87_RS01925 (ABEF87_01925) | - | 395655..396686 (-) | 1032 | WP_347455491.1 | lipase secretion chaperone | - |
| ABEF87_RS01930 (ABEF87_01930) | truB | 396842..397747 (+) | 906 | WP_347453523.1 | tRNA pseudouridine(55) synthase TruB | - |
| ABEF87_RS01935 (ABEF87_01935) | - | 397770..398537 (+) | 768 | WP_347455492.1 | TSUP family transporter | - |
| ABEF87_RS01940 (ABEF87_01940) | - | 398666..399133 (+) | 468 | WP_347453525.1 | hemerythrin domain-containing protein | - |
| ABEF87_RS01945 (ABEF87_01945) | - | 399188..399601 (-) | 414 | WP_347455493.1 | hypothetical protein | - |
| ABEF87_RS01950 (ABEF87_01950) | - | 399673..400551 (-) | 879 | WP_347453527.1 | EamA family transporter | - |
| ABEF87_RS01955 (ABEF87_01955) | - | 400901..402052 (+) | 1152 | WP_347455494.1 | hypothetical protein | - |
| ABEF87_RS01960 (ABEF87_01960) | - | 402175..402348 (+) | 174 | WP_347454463.1 | hypothetical protein | - |
| ABEF87_RS01965 (ABEF87_01965) | - | 402394..403065 (+) | 672 | WP_347455495.1 | hypothetical protein | - |
| ABEF87_RS01970 (ABEF87_01970) | - | 403003..404061 (-) | 1059 | WP_034586922.1 | RNA-guided endonuclease TnpB family protein | - |
| ABEF87_RS01975 (ABEF87_01975) | tnpA | 404082..404495 (+) | 414 | WP_075167884.1 | IS200/IS605 family transposase | - |
| ABEF87_RS01980 (ABEF87_01980) | - | 404665..404967 (+) | 303 | WP_347455496.1 | hypothetical protein | - |
| ABEF87_RS01985 (ABEF87_01985) | - | 404972..405214 (-) | 243 | Protein_380 | EamA family transporter | - |
| ABEF87_RS01990 (ABEF87_01990) | - | 405270..405653 (+) | 384 | WP_001055585.1 | transposase | - |
| ABEF87_RS01995 (ABEF87_01995) | tnpB | 405650..405985 (+) | 336 | WP_000618091.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ABEF87_RS02000 (ABEF87_02000) | tnpC | 406060..407664 (+) | 1605 | WP_347455497.1 | IS66 family transposase | - |
| ABEF87_RS02005 (ABEF87_02005) | - | 407686..408309 (-) | 624 | Protein_384 | EamA family transporter | - |
| ABEF87_RS02010 (ABEF87_02010) | serA | 408490..409722 (-) | 1233 | WP_034587753.1 | phosphoglycerate dehydrogenase | - |
| ABEF87_RS02015 (ABEF87_02015) | - | 410077..411486 (+) | 1410 | WP_347454120.1 | FAD-binding oxidoreductase | - |
| ABEF87_RS02020 (ABEF87_02020) | - | 411637..412011 (+) | 375 | WP_347455498.1 | hypothetical protein | - |
| ABEF87_RS02025 (ABEF87_02025) | - | 412183..413412 (+) | 1230 | WP_347455779.1 | MFS transporter | - |
| ABEF87_RS02030 (ABEF87_02030) | - | 413751..414980 (+) | 1230 | WP_347455780.1 | transposase | - |
| ABEF87_RS02035 (ABEF87_02035) | - | 415031..415231 (+) | 201 | Protein_390 | transposase | - |
| ABEF87_RS02040 (ABEF87_02040) | - | 415335..416297 (+) | 963 | WP_075174500.1 | IS30-like element IS18 family transposase | - |
| ABEF87_RS02045 (ABEF87_02045) | - | 416294..417436 (+) | 1143 | WP_347455500.1 | transposase | - |
| ABEF87_RS02050 (ABEF87_02050) | - | 417487..417789 (-) | 303 | WP_347453529.1 | DUF3817 domain-containing protein | - |
| ABEF87_RS02055 (ABEF87_02055) | sodC | 418003..418551 (-) | 549 | WP_347453530.1 | superoxide dismutase [Cu-Zn] SodC | - |
| ABEF87_RS02060 (ABEF87_02060) | - | 418679..419812 (-) | 1134 | WP_347454123.1 | AI-2E family transporter | - |
| ABEF87_RS02065 (ABEF87_02065) | - | 419791..419913 (+) | 123 | WP_347455812.1 | hypothetical protein | - |
| ABEF87_RS02070 (ABEF87_02070) | - | 419939..420583 (-) | 645 | WP_347453531.1 | ParA family protein | - |
| ABEF87_RS02075 (ABEF87_02075) | - | 420708..421184 (+) | 477 | WP_034587767.1 | Holliday junction resolvase-like protein | - |
| ABEF87_RS02080 (ABEF87_02080) | - | 421196..421771 (+) | 576 | WP_347453532.1 | hypothetical protein | - |
| ABEF87_RS02085 (ABEF87_02085) | - | 421773..422399 (-) | 627 | WP_347455501.1 | class I SAM-dependent methyltransferase | - |
| ABEF87_RS02090 (ABEF87_02090) | - | 422593..423144 (+) | 552 | WP_347453534.1 | hypothetical protein | - |
| ABEF87_RS02095 (ABEF87_02095) | - | 423257..424561 (+) | 1305 | WP_347453003.1 | IS4 family transposase | - |
| ABEF87_RS02100 (ABEF87_02100) | - | 424609..424941 (-) | 333 | WP_347453535.1 | HopJ type III effector protein | - |
| ABEF87_RS02105 (ABEF87_02105) | crcB | 425106..425486 (+) | 381 | WP_347453536.1 | fluoride efflux transporter CrcB | - |
| ABEF87_RS02110 (ABEF87_02110) | - | 425561..425818 (-) | 258 | WP_347453537.1 | type B 50S ribosomal protein L31 | - |
| ABEF87_RS02115 (ABEF87_02115) | - | 425949..427247 (-) | 1299 | WP_347455502.1 | AarF/ABC1/UbiB kinase family protein | - |
| ABEF87_RS02120 (ABEF87_02120) | - | 427506..427715 (+) | 210 | WP_347453539.1 | DUF1737 domain-containing protein | - |
| ABEF87_RS02125 (ABEF87_02125) | - | 427973..429340 (-) | 1368 | WP_347453540.1 | MATE family efflux transporter | - |
| ABEF87_RS02130 (ABEF87_02130) | - | 429381..429839 (-) | 459 | WP_034587787.1 | DMT family transporter | - |
| ABEF87_RS02135 (ABEF87_02135) | hemW | 429964..431118 (+) | 1155 | WP_347453541.1 | radical SAM family heme chaperone HemW | - |
| ABEF87_RS02140 (ABEF87_02140) | - | 431122..432093 (-) | 972 | WP_347455503.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16269.61 Da Isoelectric Point: 8.4895
>NTDB_id=1002800 ABEF87_RS01890 WP_347453518.1 390840..391286(+) (comE) [Acinetobacter thermotolerans strain ANC 7919]
MNLNISPTKGFTLIELMVVVVIVAIFAAIAIPSYQSMVRRGQAAQAQDQLQQIAMALDKHKSRNFSYEGFSIPTDLTVLP
KGATGSAIRYNFNLVAGSTGQTWVLTAESKDTRNYSFLMSSTGLRCKNTTWNNIDTMNLTCGAGHEEW
MNLNISPTKGFTLIELMVVVVIVAIFAAIAIPSYQSMVRRGQAAQAQDQLQQIAMALDKHKSRNFSYEGFSIPTDLTVLP
KGATGSAIRYNFNLVAGSTGQTWVLTAESKDTRNYSFLMSSTGLRCKNTTWNNIDTMNLTCGAGHEEW
Nucleotide
Download Length: 447 bp
>NTDB_id=1002800 ABEF87_RS01890 WP_347453518.1 390840..391286(+) (comE) [Acinetobacter thermotolerans strain ANC 7919]
ATGAATTTAAATATTTCACCGACCAAGGGCTTCACTTTAATTGAACTGATGGTGGTGGTGGTAATTGTTGCGATTTTCGC
AGCAATTGCCATTCCATCCTATCAGTCAATGGTTCGACGTGGTCAGGCAGCACAGGCTCAAGATCAGTTACAGCAAATTG
CCATGGCACTTGATAAGCATAAATCACGTAATTTTAGCTATGAAGGTTTTAGTATACCCACGGACTTAACCGTGCTTCCT
AAAGGGGCAACTGGATCTGCAATCAGATATAATTTTAATTTGGTTGCGGGATCAACAGGGCAAACTTGGGTATTAACCGC
TGAAAGTAAAGATACGAGGAACTATAGCTTTTTAATGTCAAGTACAGGTCTACGTTGTAAAAATACCACGTGGAATAATA
TTGATACTATGAACTTGACGTGTGGCGCGGGGCATGAAGAATGGTAA
ATGAATTTAAATATTTCACCGACCAAGGGCTTCACTTTAATTGAACTGATGGTGGTGGTGGTAATTGTTGCGATTTTCGC
AGCAATTGCCATTCCATCCTATCAGTCAATGGTTCGACGTGGTCAGGCAGCACAGGCTCAAGATCAGTTACAGCAAATTG
CCATGGCACTTGATAAGCATAAATCACGTAATTTTAGCTATGAAGGTTTTAGTATACCCACGGACTTAACCGTGCTTCCT
AAAGGGGCAACTGGATCTGCAATCAGATATAATTTTAATTTGGTTGCGGGATCAACAGGGCAAACTTGGGTATTAACCGC
TGAAAGTAAAGATACGAGGAACTATAGCTTTTTAATGTCAAGTACAGGTCTACGTTGTAAAAATACCACGTGGAATAATA
TTGATACTATGAACTTGACGTGTGGCGCGGGGCATGAAGAATGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Acinetobacter baylyi ADP1 |
42.941 |
100 |
0.493 |
| pilY2 | Acinetobacter baumannii D1279779 |
44.079 |
100 |
0.453 |