Detailed information NTG1002750

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABEF82_RS01505
• Genome accession: NZ_CP156787
• Coordinates: 318394..319254 (-)
• Length: 286 a.a.
• NCBI ID: WP_347456139.1
• Uniprot ID: -
• Organism: Acinetobacter thermotolerans strain ANC 7924
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 313394..324254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEF82_RS01480 (ABEF82_01480)	recN	313515..315176 (-)	1662	WP_347456135.1	DNA repair protein RecN	-
ABEF82_RS01485 (ABEF82_01485)	-	315593..315916 (+)	324	WP_034587531.1	pyrimidine/purine nucleoside phosphorylase	-
ABEF82_RS01490 (ABEF82_01490)	rlmB	316070..316819 (+)	750	WP_347456136.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABEF82_RS01495 (ABEF82_01495)	-	316853..317743 (+)	891	WP_347456137.1	DMT family transporter	-
ABEF82_RS01500 (ABEF82_01500)	coaE	317793..318392 (-)	600	WP_347456138.1	dephospho-CoA kinase	-
ABEF82_RS01505 (ABEF82_01505)	pilD	318394..319254 (-)	861	WP_347456139.1	A24 family peptidase	Machinery gene
ABEF82_RS01510 (ABEF82_01510)	pilC	319269..320501 (-)	1233	WP_347456140.1	type II secretion system F family protein	Machinery gene
ABEF82_RS01515 (ABEF82_01515)	pilB	320533..322242 (-)	1710	WP_347456141.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABEF82_RS01520 (ABEF82_01520)	tpiA	322525..323316 (+)	792	WP_347456142.1	triose-phosphate isomerase	-
ABEF82_RS01525 (ABEF82_01525)	secG	323330..323659 (+)	330	WP_034587516.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31939.23 Da
• Isoelectric Point: 7.8073

>NTDB_id=1002750 ABEF82_RS01505 WP_347456139.1 318394..319254(-) (pilD) [Acinetobacter thermotolerans strain ANC 7924]
MNSLIDFLIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIEESKITLSKPASTCPKCQTP
IRWYQNIPVISWLALRGKCGSCTHPISARYPFIEILTAVCALIVVAVFDPTVQMLFGLVLTYMLIALTFIDFDTQLLPDR
FTLPLAALGLGINSYSIYTSPTSAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKAYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=1002750 ABEF82_RS01505 WP_347456139.1 318394..319254(-) (pilD) [Acinetobacter thermotolerans strain ANC 7924]
TTGAATAGTTTAATTGATTTTTTAATTCAAAACCCGACTGCGCTCTATATCGCAGTTGGGCTTTTTAGCCTCTGTATCGG
CAGTTTTCTGAATGTAGTGATTTACCGCACACCGAAAATGATGGAACAGGAATGGCGAACCGATTGCCAGCTGTTTTTAC
ATCCAGATCAGCCGATCATTGAGGAAAGCAAAATCACTTTAAGCAAACCAGCATCCACTTGTCCGAAATGCCAGACACCT
ATCCGCTGGTACCAGAATATTCCTGTGATCAGCTGGTTAGCGTTACGTGGTAAATGTGGTTCCTGCACTCATCCAATCAG
TGCCCGATATCCATTTATTGAGATTCTGACTGCAGTCTGTGCACTCATTGTTGTGGCAGTCTTTGATCCAACAGTGCAGA
TGCTATTTGGACTAGTGCTGACCTATATGCTGATTGCCCTGACTTTTATCGACTTTGATACCCAGCTACTGCCGGATCGC
TTTACCCTGCCACTCGCTGCACTGGGTCTAGGAATTAATAGCTACAGTATTTATACCTCACCAACTTCAGCAATTTGGGG
TTATATCATTGGCTTCCTCTGCCTTTGGATCGTGTACTACCTGTTTAAGATAATTACAGGGAAAGAAGGTATGGGCTATG
GTGACTTCAAATTACTGGCTGCGCTAGGTGCCTGGATGGGCCCACTGATGCTGCCGTTGATCGTATTGCTATCTTCACTG
GTCGGTGCCATTATCGGTATCATCCTGTTAAAAGTTCGTAAGGAAAATCAGCCTTTTGCGTTTGGTCCTTATATTGCAAT
TGCTGGCTGGATTGCTTTCCTTTGGGGTGAACAGATTATGAAAGCATATTTGGGTCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	81.053	99.65	0.808
pilD	Acinetobacter nosocomialis M2	80.702	99.65	0.804
pilD	Vibrio cholerae strain A1552	55.431	93.357	0.517
pilD	Vibrio campbellii strain DS40M4	52.788	94.056	0.497
pilD	Neisseria gonorrhoeae MS11	45.848	96.853	0.444