Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABEF81_RS01070 Genome accession   NZ_CP156778
Coordinates   225630..226769 (-) Length   379 a.a.
NCBI ID   WP_347456124.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7951     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 220630..231769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF81_RS01045 (ABEF81_01045) - 220764..221729 (-) 966 WP_347454541.1 hypothetical protein -
  ABEF81_RS01050 (ABEF81_01050) - 221959..222552 (-) 594 WP_347453425.1 hypothetical protein -
  ABEF81_RS01055 (ABEF81_01055) - 222910..223455 (-) 546 WP_347456123.1 glutathione peroxidase -
  ABEF81_RS01060 (ABEF81_01060) - 223674..224573 (+) 900 WP_347453428.1 DMT family transporter -
  ABEF81_RS01065 (ABEF81_01065) - 225013..225588 (-) 576 WP_347453429.1 Sua5/YciO/YrdC/YwlC family protein -
  ABEF81_RS01070 (ABEF81_01070) dprA 225630..226769 (-) 1140 WP_347456124.1 DNA-processing protein DprA Machinery gene
  ABEF81_RS01075 (ABEF81_01075) tsaP 226866..228020 (-) 1155 WP_347453430.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABEF81_RS01080 (ABEF81_01080) def 228142..228672 (+) 531 WP_034582549.1 peptide deformylase -
  ABEF81_RS01085 (ABEF81_01085) - 228764..229180 (+) 417 WP_347453431.1 DUF2946 family protein -
  ABEF81_RS01090 (ABEF81_01090) - 229253..231292 (+) 2040 WP_347453432.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42907.59 Da        Isoelectric Point: 6.3526

>NTDB_id=1002662 ABEF81_RS01070 WP_347456124.1 225630..226769(-) (dprA) [Acinetobacter thermotolerans strain ANC 7951]
MLHTLSTHQLDTIRLWYLVQHSLSSFYKLYHHYNDLAQATRLDQFETWRKLGLHKNHLQRLQDFHSAESQSQFQRCLDSI
QSSCDFILLQDEVNYPQQLSPYDNRPPILFGQGKMDSLLQAQIAIVGSRKPSTHGRQMAYDFAYYLSEQGFYINSGLAEG
IDEAAHRAALQQHRTIAVMGTGLDQTYPSVNQMLRKQILETGGTIITEFLPGTPPLQQHFPRRNRIVSGLSLGVIVAEAA
LQSGSLITAKWAAEQGKTVFAIPGHIYSEYHKGCHQLIREGAILIDHPQQVIEDLALATQWQISAQPFSSVSDESEQIEI
PQHLLPLYNQLDWIGQDLDQISLQLNQDVSTVTAQLMELELLGLSTQQAGMFLRCRTSK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1002662 ABEF81_RS01070 WP_347456124.1 225630..226769(-) (dprA) [Acinetobacter thermotolerans strain ANC 7951]
ATGCTGCATACGCTTTCTACGCATCAACTCGACACAATCCGTCTCTGGTATTTGGTACAACATTCTCTTTCCAGCTTTTA
TAAGCTCTATCACCATTATAATGATCTGGCCCAAGCCACTCGTCTTGATCAGTTTGAAACCTGGCGTAAACTGGGTCTGC
ATAAAAATCATCTGCAACGCCTGCAAGATTTTCATTCCGCAGAATCACAAAGCCAGTTTCAGCGCTGTCTGGATAGCATT
CAGTCCAGCTGTGACTTTATCCTGCTCCAGGATGAGGTGAACTACCCTCAACAGCTCAGTCCCTATGACAATCGCCCACC
GATTCTGTTTGGTCAGGGCAAAATGGATAGCTTGTTACAGGCGCAAATCGCCATTGTTGGGAGTCGCAAGCCCAGTACCC
ATGGCCGGCAAATGGCTTATGATTTTGCCTACTATCTGAGTGAACAGGGCTTTTATATCAATAGTGGTCTAGCAGAAGGG
ATTGATGAAGCCGCACATCGGGCCGCTTTGCAGCAGCACCGCACCATTGCCGTGATGGGTACCGGACTGGATCAAACCTA
TCCCTCGGTCAATCAAATGTTAAGAAAACAGATTCTGGAAACTGGTGGAACAATCATTACCGAATTTCTGCCGGGTACAC
CTCCCCTACAGCAACATTTCCCACGGCGTAACCGTATTGTTAGTGGACTAAGCCTCGGTGTGATTGTGGCAGAAGCGGCA
TTGCAAAGCGGCTCACTGATTACCGCCAAATGGGCTGCAGAACAGGGCAAAACCGTGTTTGCCATTCCGGGACATATCTA
TAGCGAATATCATAAAGGCTGTCATCAGCTGATTCGGGAGGGGGCGATTCTGATTGACCATCCGCAGCAAGTGATTGAAG
ACCTGGCTTTGGCAACCCAATGGCAAATTTCTGCTCAACCATTCAGTTCAGTATCTGATGAATCAGAACAAATTGAAATT
CCACAGCATCTTCTTCCTCTCTACAACCAGCTGGACTGGATCGGGCAGGATCTAGATCAGATCAGCCTTCAGCTGAATCA
GGATGTCTCCACCGTGACCGCCCAGCTAATGGAACTGGAGCTTCTTGGGCTAAGTACCCAGCAGGCCGGCATGTTTCTGC
GTTGTCGTACCAGCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

62.069

99.472

0.617

  dprA Acinetobacter baumannii D1279779

61.538

99.472

0.612

  dprA Acinetobacter baylyi ADP1

60.105

100

0.604


Multiple sequence alignment