Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABEF85_RS14215 Genome accession   NZ_CP156776
Coordinates   2919707..2920846 (+) Length   379 a.a.
NCBI ID   WP_347460802.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7955     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2914707..2925846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF85_RS14195 (ABEF85_14195) - 2915187..2917223 (-) 2037 WP_347460800.1 TonB-dependent copper receptor -
  ABEF85_RS14200 (ABEF85_14200) - 2917296..2917712 (-) 417 WP_347453431.1 DUF2946 family protein -
  ABEF85_RS14205 (ABEF85_14205) def 2917804..2918334 (-) 531 WP_034582549.1 peptide deformylase -
  ABEF85_RS14210 (ABEF85_14210) tsaP 2918456..2919610 (+) 1155 WP_347453430.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABEF85_RS14215 (ABEF85_14215) dprA 2919707..2920846 (+) 1140 WP_347460802.1 DNA-processing protein DprA Machinery gene
  ABEF85_RS14220 (ABEF85_14220) - 2920888..2921463 (+) 576 WP_347460803.1 Sua5/YciO/YrdC/YwlC family protein -
  ABEF85_RS14225 (ABEF85_14225) - 2921903..2922802 (-) 900 WP_347460804.1 DMT family transporter -
  ABEF85_RS14230 (ABEF85_14230) - 2923020..2923565 (+) 546 WP_347460805.1 glutathione peroxidase -
  ABEF85_RS14235 (ABEF85_14235) - 2923777..2924136 (+) 360 WP_347453426.1 RcnB family protein -
  ABEF85_RS14240 (ABEF85_14240) - 2924201..2925352 (-) 1152 WP_347460806.1 IS4-like element ISAbe18 family transposase -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42832.55 Da        Isoelectric Point: 6.4985

>NTDB_id=1002657 ABEF85_RS14215 WP_347460802.1 2919707..2920846(+) (dprA) [Acinetobacter thermotolerans strain ANC 7955]
MLHTLSTHQLDTIRLWYLVQHSLSSFYKLYHHYNDLAQATRLDQFETWRKLGLHKNHLQRLQDFHSAESQSQFQRCLDSI
QSSCDFILLQDEVNYPQQLSPYDNRPPILFGQGKMDSLLQAQIAIVGSRKPSTHGRQMAYDFAYYLSEQGFYINSGLAEG
IDEAAHRAALQHHRTIAVMGTGLDQTYPSVNQTLRKQILETGGTIITEFLPGTPPLQQHFPRRNRIVSGLSLGVIVAEAA
LQSGSLITAKWAAEQGKTVFAIPGHIYSEYHKGCHQLIREGAILIDHPQQVIEDLALATQWQISAQPTSSTLVEPEQIEI
PQHLLPLYNQLDWIGQDLDQISLQLNQDVSTVTAQLMELELLGLSTQQAGMFLRCRTGK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1002657 ABEF85_RS14215 WP_347460802.1 2919707..2920846(+) (dprA) [Acinetobacter thermotolerans strain ANC 7955]
ATGCTGCATACGCTTTCTACGCATCAACTCGACACAATCCGTCTCTGGTATTTGGTACAACATTCTCTTTCCAGCTTTTA
TAAGCTCTATCACCATTATAATGATCTGGCCCAAGCCACTCGTCTTGATCAGTTTGAAACCTGGCGTAAACTGGGTCTGC
ATAAAAATCATCTGCAACGCCTGCAAGATTTTCATTCCGCAGAATCACAAAGCCAGTTTCAGCGCTGTCTGGATAGCATT
CAGTCCAGCTGTGACTTTATCCTGCTCCAGGATGAGGTGAACTACCCTCAACAGCTCAGTCCCTATGACAATCGCCCACC
GATTCTGTTTGGTCAGGGCAAAATGGATAGCTTGTTACAGGCGCAAATCGCCATTGTTGGGAGTCGCAAGCCCAGCACCC
ATGGCCGGCAAATGGCTTATGATTTTGCCTACTATCTGAGTGAACAGGGTTTCTATATTAATAGCGGTCTAGCTGAAGGG
ATTGATGAAGCCGCACATCGGGCCGCTTTGCAGCATCACCGCACCATTGCCGTGATGGGTACCGGACTAGATCAGACCTA
TCCATCAGTTAATCAAACGTTAAGAAAACAGATTCTGGAAACTGGTGGAACAATCATTACCGAATTTCTGCCGGGTACAC
CTCCCCTACAGCAACATTTCCCACGGCGTAACCGTATTGTTAGTGGACTAAGCCTCGGTGTGATTGTGGCAGAAGCGGCA
TTGCAAAGCGGCTCACTGATTACCGCCAAATGGGCTGCAGAACAGGGCAAAACCGTGTTTGCCATTCCGGGACATATCTA
TAGCGAATATCATAAAGGCTGTCATCAGCTGATTCGGGAGGGTGCGATTCTGATTGACCATCCGCAGCAAGTGATTGAAG
ATCTGGCTCTCGCTACCCAATGGCAAATTTCTGCTCAACCCACCAGCTCAACGCTAGTAGAACCGGAACAGATTGAAATT
CCTCAACACTTACTTCCTCTCTATAACCAGCTGGACTGGATCGGGCAAGATCTGGACCAGATCAGCCTTCAGCTGAATCA
GGATGTCTCCACCGTGACCGCCCAGCTGATGGAACTGGAGCTTCTTGGGCTAAGTACCCAGCAGGCTGGCATGTTTCTGC
GTTGTCGTACCGGCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

62.334

99.472

0.62

  dprA Acinetobacter baumannii D1279779

61.804

99.472

0.615

  dprA Acinetobacter baylyi ADP1

60.105

100

0.604


Multiple sequence alignment