Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABEF85_RS13975 Genome accession   NZ_CP156776
Coordinates   2865464..2866894 (+) Length   476 a.a.
NCBI ID   WP_161788389.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7955     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2860464..2871894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF85_RS13955 (ABEF85_13955) thrC 2860734..2861873 (+) 1140 WP_347453453.1 threonine synthase -
  ABEF85_RS13960 (ABEF85_13960) - 2861933..2862982 (-) 1050 WP_347453452.1 serine hydrolase -
  ABEF85_RS13965 (ABEF85_13965) - 2863203..2863838 (+) 636 WP_034587571.1 response regulator -
  ABEF85_RS13970 (ABEF85_13970) pilS 2863877..2865442 (+) 1566 WP_347454532.1 ATP-binding protein Regulator
  ABEF85_RS13975 (ABEF85_13975) pilR 2865464..2866894 (+) 1431 WP_161788389.1 sigma-54 dependent transcriptional regulator Regulator
  ABEF85_RS13980 (ABEF85_13980) - 2866900..2868075 (-) 1176 WP_034587576.1 S41 family peptidase -
  ABEF85_RS13985 (ABEF85_13985) gpmI 2868096..2869643 (-) 1548 WP_347453450.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABEF85_RS13990 (ABEF85_13990) lptG 2869767..2870837 (-) 1071 WP_347453449.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53833.83 Da        Isoelectric Point: 6.2814

>NTDB_id=1002654 ABEF85_RS13975 WP_161788389.1 2865464..2866894(+) (pilR) [Acinetobacter thermotolerans strain ANC 7955]
MVEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKRRLTDHQYDACLTDLNLPDGNGLQLLDFISEHYPSLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLIQKALNKPANYASNQEDTLEYKMLIGQSKPIQQLRATLRKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISASHQDLEALVQQGKFRQDLFFRIHVMDLVLPPLRERGNDILL
LAEHFIQKICQEWQIPAKRLTERSKELLLTQYYPGNVRELRNIIERAITLSDEDIIDIQHLQTAPLRQSFVTPENTLAST
SESNSNTHNGSDAFIVPKKLPEEGLELYMEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=1002654 ABEF85_RS13975 WP_161788389.1 2865464..2866894(+) (pilR) [Acinetobacter thermotolerans strain ANC 7955]
ATTGTGGAACAACAACCACTGGTACTTTTGGTCGATGACGAAGAAGATCTGTGTACCTTGATGCAGATGTCACTGATGCG
TATGGGGATACGCACGCACATCGCACATCGCCTTGAGGATGCCAAAAGACGCTTGACCGATCATCAGTATGATGCCTGTC
TGACCGACCTAAACTTACCGGATGGCAATGGATTGCAATTGCTGGATTTTATCAGTGAACATTACCCTTCCCTGCCGGTT
GCCGTCTTAACTGCCTATGGCAATATGGATATTGCTATTGCTGCTCTGAAAGCCGGGGCTTTTGACTTTGTCAGCAAGCC
GATCAATCAAAAACATCTGGAACAATTAATCCAGAAAGCACTGAATAAACCGGCCAATTATGCTTCCAATCAGGAAGACA
CGCTTGAATACAAGATGCTGATCGGCCAGTCCAAACCGATTCAGCAACTGCGTGCGACTTTACGCAAAATCGCCCGTTCT
CAGGCACCCGTATTTATCACTGGTGAGTCAGGAACCGGTAAAGAAGTCGTTGCCAATCTGGTACATCGACTCAGTAACCG
TAGTGAAGGTCCATTTATCGCGATTAACTGTGGTGCGATTCCTACCGAGCTGATGGAAAGCGAGCTGTTCGGGCATAAGA
AAGGTAGCTTTACTGGCGCGACTCAGGACAAACAGGGCCTGATCCAGTCTGCACATGGTGGCAGTTTATTCTTAGATGAA
ATTGCCGAACTACCGCTGAGTATGCAGGTCAAACTATTGCGTGCAGTACAGGAAAAACGTATTCGCCCGCTCGGTTCAGA
TACCGAAATTGATGTGGATTTCCGCGTGATCAGTGCCAGCCATCAGGACTTAGAAGCACTGGTACAACAGGGTAAATTCC
GTCAGGATTTGTTCTTCCGGATTCATGTCATGGATCTGGTGCTGCCGCCATTGCGTGAACGCGGCAATGATATTCTTCTG
CTGGCGGAACACTTTATCCAGAAAATCTGCCAGGAATGGCAAATTCCAGCCAAGCGTCTGACTGAACGCAGTAAAGAATT
ATTACTAACCCAATATTACCCGGGCAATGTGCGGGAACTGCGCAATATTATCGAACGCGCCATTACCCTGAGCGATGAAG
ACATTATCGATATTCAGCACCTGCAAACGGCGCCATTACGGCAAAGTTTTGTCACTCCTGAAAATACTCTAGCCTCTACG
TCTGAATCGAACAGCAATACTCACAACGGTTCTGATGCTTTTATCGTTCCAAAAAAACTTCCAGAAGAAGGACTGGAACT
ATATATGGAGAAAATCGAAAAGGAAATCCTGCTGAATGCGCTGAACCTGACCCACTGGAACCGGACGCTGGCAGCGAAAA
AACTCGGTATGTCCTTCCGTTCGCTACGTTATCGTTTGAAAAAGTTTGGATTAGACACTGAGGAAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.05

100

0.761
  pilR Pseudomonas aeruginosa PAK

48.172

97.689

0.471

Multiple sequence alignment