Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABEF85_RS13970 Genome accession   NZ_CP156776
Coordinates   2863877..2865442 (+) Length   521 a.a.
NCBI ID   WP_347454532.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7955     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2858877..2870442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF85_RS13950 (ABEF85_13950) - 2859372..2860676 (+) 1305 WP_034587565.1 homoserine dehydrogenase -
  ABEF85_RS13955 (ABEF85_13955) thrC 2860734..2861873 (+) 1140 WP_347453453.1 threonine synthase -
  ABEF85_RS13960 (ABEF85_13960) - 2861933..2862982 (-) 1050 WP_347453452.1 serine hydrolase -
  ABEF85_RS13965 (ABEF85_13965) - 2863203..2863838 (+) 636 WP_034587571.1 response regulator -
  ABEF85_RS13970 (ABEF85_13970) pilS 2863877..2865442 (+) 1566 WP_347454532.1 ATP-binding protein Regulator
  ABEF85_RS13975 (ABEF85_13975) pilR 2865464..2866894 (+) 1431 WP_161788389.1 sigma-54 dependent transcriptional regulator Regulator
  ABEF85_RS13980 (ABEF85_13980) - 2866900..2868075 (-) 1176 WP_034587576.1 S41 family peptidase -
  ABEF85_RS13985 (ABEF85_13985) gpmI 2868096..2869643 (-) 1548 WP_347453450.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59368.69 Da        Isoelectric Point: 6.4982

>NTDB_id=1002653 ABEF85_RS13970 WP_347454532.1 2863877..2865442(+) (pilS) [Acinetobacter thermotolerans strain ANC 7955]
MSQRSSYSELNQYLLGTWYAAYRLIISTGLLLIFLLTYPEYNSELAHPQLYHYVLSSFIAISLGQLFLLKYVKKFIHKQL
TAIFIVDVCALSLLTLATSGANLHLSMLFVITIFAASILLNAQKALVITLIAVISVTYQHFIVSIFTLSSLGNIGNSAIL
AFLFCVVYGIGQIAVRRFQILENLNFSQSMELYRLQNINRYILEQIDTGYLVLDENCHVVLSNPAACHLLGIEHTYSFDK
FPLYQFQPDLFELIRFENLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDARKINQEVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGSEQEQQEVLHSMISKQATRINRIIEDTLNMVKNKETRPVPIQLNEFIPQCLHEDLADIAD
HIKFNIDMRLDIQFDEAQLRQVLINLLRNAVRHNDPTVGPVELKVHPYEHKVWIDVRDFGDGVTPADQSLLFKPFFSNSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1002653 ABEF85_RS13970 WP_347454532.1 2863877..2865442(+) (pilS) [Acinetobacter thermotolerans strain ANC 7955]
ATGTCGCAGCGATCTTCTTATTCAGAGCTGAATCAGTATCTGCTCGGTACCTGGTATGCGGCATATCGCTTAATTATCAG
CACGGGCCTGCTGCTGATTTTTCTGCTGACCTATCCGGAATATAACAGCGAACTAGCCCATCCTCAGCTCTATCATTATG
TGCTGAGCAGTTTTATTGCGATTTCACTGGGGCAGCTGTTTCTGCTGAAATATGTCAAGAAATTTATTCACAAACAGCTG
ACTGCGATTTTTATTGTTGATGTCTGCGCCCTAAGCCTGCTGACACTCGCCACCAGCGGGGCCAATCTGCATCTCAGTAT
GCTGTTTGTCATCACCATCTTTGCCGCTTCAATATTACTGAATGCACAAAAGGCACTGGTGATTACCCTGATTGCGGTGA
TCAGTGTCACCTATCAACATTTTATTGTCAGCATCTTTACTTTGTCCTCACTCGGCAATATCGGCAATAGTGCCATTCTG
GCTTTCCTGTTCTGTGTGGTCTATGGCATCGGGCAGATTGCGGTACGGCGTTTCCAGATTCTGGAAAACCTGAACTTCTC
CCAGTCCATGGAGCTGTACCGGTTACAGAACATTAACCGCTATATTCTGGAACAGATTGATACGGGTTATCTGGTATTAG
ATGAAAACTGTCATGTGGTGTTGAGTAATCCTGCTGCCTGCCATTTGCTGGGGATTGAACATACCTATTCCTTTGATAAG
TTCCCCCTGTACCAGTTCCAGCCGGATCTGTTTGAACTGATCCGCTTTGAGAATCTGGAAAATGGTGAGCGTTTCCAGTT
TGAGTCACAGCAGAGCCGGTTTAATATCCATGTACAAGTCCAGAAACTGATTGTGCCACACCAGACCCTTATGCTACTGG
TGCTGCAGGATGCACGAAAAATCAATCAAGAGGTGCAGCAACTTAAACTGGCAGCATTGGGGCAACTTTCTGCCAGTATC
GCGCATGAAATCCGTAATCCTTTAGCTGCCATTGTGCAGGCCAATGACCTGTTGCCCGGTTCAGAACAGGAACAGCAGGA
AGTCCTGCACAGCATGATCAGCAAACAGGCCACCCGGATTAACCGGATTATTGAAGACACGCTGAATATGGTGAAAAATA
AAGAAACTCGCCCAGTACCGATTCAGCTCAATGAATTTATTCCGCAATGCCTACATGAGGATCTGGCTGATATTGCGGAT
CACATTAAATTCAATATCGACATGCGTCTGGATATCCAGTTTGATGAAGCCCAGCTGCGACAGGTGCTGATCAATCTGTT
ACGCAATGCAGTACGGCATAATGACCCGACTGTAGGACCAGTTGAGTTAAAGGTACATCCTTATGAGCATAAGGTCTGGA
TTGATGTACGAGATTTTGGCGATGGCGTGACGCCAGCCGATCAAAGCTTATTATTTAAACCGTTTTTCAGTAACTCGATT
AATGGCACAGGACTCGGGCTCTATCTCTCCCATAGTTTCTGTGAAGCCAATCAGGCACAATTGAATTATATACAACAAGA
ACAGGGTGCTTGCTTCAGGATCAGCTGCCAGCGCATTACTGTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.436

96.929

0.547

Multiple sequence alignment