Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABEF80_RS05885 Genome accession   NZ_CP156772
Coordinates   1195995..1196702 (+) Length   235 a.a.
NCBI ID   WP_347456800.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7970     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1190995..1201702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF80_RS05860 (ABEF80_05860) - 1191189..1193426 (+) 2238 WP_347453842.1 NADP-dependent isocitrate dehydrogenase -
  ABEF80_RS05865 (ABEF80_05865) - 1193720..1194010 (+) 291 WP_347453843.1 hypothetical protein -
  ABEF80_RS05870 (ABEF80_05870) - 1193997..1194254 (+) 258 WP_347453844.1 hypothetical protein -
  ABEF80_RS05875 (ABEF80_05875) - 1194306..1195346 (+) 1041 WP_347453845.1 metallophosphoesterase -
  ABEF80_RS05880 (ABEF80_05880) - 1195425..1195847 (-) 423 WP_034588106.1 OsmC family protein -
  ABEF80_RS05885 (ABEF80_05885) crp 1195995..1196702 (+) 708 WP_347456800.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABEF80_RS05890 (ABEF80_05890) - 1196897..1197946 (+) 1050 WP_347453847.1 NADP(H)-dependent aldo-keto reductase -
  ABEF80_RS05895 (ABEF80_05895) clpB 1198299..1200878 (+) 2580 WP_347453848.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26472.15 Da        Isoelectric Point: 4.6888

>NTDB_id=1002599 ABEF80_RS05885 WP_347456800.1 1195995..1196702(+) (crp) [Acinetobacter thermotolerans strain ANC 7970]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEISYENFHELSKKYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEAPAEEEFEEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1002599 ABEF80_RS05885 WP_347456800.1 1195995..1196702(+) (crp) [Acinetobacter thermotolerans strain ANC 7970]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCGCTGTCTCCGGGCCAACTGCCAGAATCGGTGAAAGCATTATTAAA
ACGTGCATATATTAATCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCCAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGACCGTGAAATTGTCGTAGCGTATTTGAACGCGGGTGACTTC
TTTGGGGAAATGGGCTTATTCGAGGCAAATCCACAGCGTACTGCAGAAGTGCGTACACGTGACGTTTGTGAAATTGCCGA
AATTAGCTACGAAAACTTTCATGAACTGAGCAAGAAATATCCAGACTTAAGTTATGCGGTATTTGCCCAGCTGGTTCGCC
GTCTGAAAAACACTACCCGTAAAGTGACCGATCTTGCATTTATCGACGTATCTGGTCGTATTGCGCGTTGTCTGATTGAT
TTGTCTGCTCAGCCTGAAGCGATGATTCTGCCAAATGGTCGTCAGATCCGGATTACCCGTCAGGAAATCGGTCGTATCGT
GGGCTGTTCCCGTGAAATGGTGGGTCGTGTTCTGAAAACTTTAGAAGAACAGGGCATGATCGAGACCGACGGTAAAGCTA
TTCTGATTTTTGATGCTTCACTGGAACAGAATGAAGCACCTGCTGAGGAAGAGTTTGAAGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.489

100

0.915
  crp Vibrio cholerae strain A1552

47.573

87.66

0.417
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment