Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | ABEF80_RS01910 | Genome accession | NZ_CP156772 |
| Coordinates | 397077..397580 (+) | Length | 167 a.a. |
| NCBI ID | WP_347456734.1 | Uniprot ID | - |
| Organism | Acinetobacter thermotolerans strain ANC 7970 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 379187..419247 | 397077..397580 | within | 0 |
Gene organization within MGE regions
Location: 379187..419247
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEF80_RS01840 (ABEF80_01840) | - | 379187..382810 (+) | 3624 | WP_347455484.1 | fused MFS/spermidine synthase | - |
| ABEF80_RS01845 (ABEF80_01845) | - | 382926..384560 (+) | 1635 | WP_347455485.1 | Wzy polymerase domain-containing protein | - |
| ABEF80_RS01850 (ABEF80_01850) | bfr | 384615..385079 (-) | 465 | WP_347456728.1 | bacterioferritin | - |
| ABEF80_RS01855 (ABEF80_01855) | - | 385319..385513 (-) | 195 | WP_347453509.1 | bacterioferritin-associated ferredoxin | - |
| ABEF80_RS01860 (ABEF80_01860) | - | 385702..386085 (-) | 384 | WP_347453510.1 | RidA family protein | - |
| ABEF80_RS01865 (ABEF80_01865) | - | 386161..388263 (-) | 2103 | WP_347456729.1 | HD domain-containing protein | - |
| ABEF80_RS01870 (ABEF80_01870) | rpoZ | 388476..388757 (-) | 282 | WP_034587719.1 | DNA-directed RNA polymerase subunit omega | - |
| ABEF80_RS01875 (ABEF80_01875) | gmk | 388832..389455 (-) | 624 | WP_034587720.1 | guanylate kinase | - |
| ABEF80_RS01880 (ABEF80_01880) | ispH | 389590..390540 (+) | 951 | WP_347456730.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| ABEF80_RS01885 (ABEF80_01885) | - | 390704..391252 (+) | 549 | WP_347456731.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| ABEF80_RS01890 (ABEF80_01890) | pilV | 391249..391770 (+) | 522 | WP_218951679.1 | type IV pilus modification protein PilV | - |
| ABEF80_RS01895 (ABEF80_01895) | - | 391767..392681 (+) | 915 | WP_180182064.1 | PilW family protein | - |
| ABEF80_RS01900 (ABEF80_01900) | - | 392686..393426 (+) | 741 | WP_347456732.1 | hypothetical protein | - |
| ABEF80_RS01905 (ABEF80_01905) | - | 393442..397077 (+) | 3636 | WP_347456733.1 | hypothetical protein | - |
| ABEF80_RS01910 (ABEF80_01910) | comE | 397077..397580 (+) | 504 | WP_347456734.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ABEF80_RS01915 (ABEF80_01915) | - | 397574..398005 (+) | 432 | WP_347456735.1 | type IV pilin protein | - |
| ABEF80_RS01920 (ABEF80_01920) | rpsP | 398126..398383 (+) | 258 | WP_034587736.1 | 30S ribosomal protein S16 | - |
| ABEF80_RS01925 (ABEF80_01925) | rimM | 398413..398961 (+) | 549 | WP_347456736.1 | ribosome maturation factor RimM | - |
| ABEF80_RS01930 (ABEF80_01930) | trmD | 399003..399752 (+) | 750 | WP_347456186.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ABEF80_RS01935 (ABEF80_01935) | rplS | 399929..400300 (+) | 372 | WP_004787066.1 | 50S ribosomal protein L19 | - |
| ABEF80_RS01940 (ABEF80_01940) | - | 400362..401345 (-) | 984 | WP_034587797.1 | triacylglycerol lipase | - |
| ABEF80_RS01945 (ABEF80_01945) | - | 401881..402912 (-) | 1032 | WP_347454469.1 | lipase secretion chaperone | - |
| ABEF80_RS01950 (ABEF80_01950) | truB | 403068..403973 (+) | 906 | WP_347453523.1 | tRNA pseudouridine(55) synthase TruB | - |
| ABEF80_RS01955 (ABEF80_01955) | - | 403996..404763 (+) | 768 | WP_347455492.1 | TSUP family transporter | - |
| ABEF80_RS01960 (ABEF80_01960) | - | 404892..405354 (+) | 463 | Protein_372 | hemerythrin domain-containing protein | - |
| ABEF80_RS01965 (ABEF80_01965) | - | 405409..405822 (-) | 414 | WP_347455493.1 | hypothetical protein | - |
| ABEF80_RS01970 (ABEF80_01970) | - | 405894..406772 (-) | 879 | WP_347453527.1 | EamA family transporter | - |
| ABEF80_RS01975 (ABEF80_01975) | - | 406956..407831 (-) | 876 | WP_000102417.1 | IS982-like element ISAba825 family transposase | - |
| ABEF80_RS01980 (ABEF80_01980) | - | 408076..409227 (+) | 1152 | WP_347456737.1 | hypothetical protein | - |
| ABEF80_RS01985 (ABEF80_01985) | - | 409350..409523 (+) | 174 | WP_347454463.1 | hypothetical protein | - |
| ABEF80_RS01990 (ABEF80_01990) | - | 409739..410797 (-) | 1059 | WP_034586922.1 | RNA-guided endonuclease TnpB family protein | - |
| ABEF80_RS01995 (ABEF80_01995) | tnpA | 410818..411231 (+) | 414 | WP_075167884.1 | IS200/IS605 family transposase | - |
| ABEF80_RS02000 (ABEF80_02000) | serA | 411378..412610 (-) | 1233 | WP_034587753.1 | phosphoglycerate dehydrogenase | - |
| ABEF80_RS02005 (ABEF80_02005) | - | 412965..414374 (+) | 1410 | WP_347454120.1 | FAD-binding oxidoreductase | - |
| ABEF80_RS02010 (ABEF80_02010) | - | 414525..414899 (+) | 375 | WP_347454460.1 | hypothetical protein | - |
| ABEF80_RS02015 (ABEF80_02015) | - | 415071..416300 (+) | 1230 | WP_347454121.1 | MFS transporter | - |
| ABEF80_RS02020 (ABEF80_02020) | - | 416639..417868 (+) | 1230 | WP_347456840.1 | transposase | - |
| ABEF80_RS02025 (ABEF80_02025) | - | 418018..419247 (+) | 1230 | WP_347455790.1 | transposase | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18496.48 Da Isoelectric Point: 9.4464
>NTDB_id=1002593 ABEF80_RS01910 WP_347456734.1 397077..397580(+) (comE) [Acinetobacter thermotolerans strain ANC 7970]
MHKSNHGFTLIELMVVVVIVALLAAIALPSYQQYIRKKDMALAQQEMLKLADQLERHKAKNFSYKKFDPKYLYSGITTPL
NVVYVPGGISTAKSKYKIEIKDISNSTEVDLLTSSLGKAWSMKASPINSSDALLYTFLITSHGIKCKAKEAENVSFTACS
GQGAEDW
MHKSNHGFTLIELMVVVVIVALLAAIALPSYQQYIRKKDMALAQQEMLKLADQLERHKAKNFSYKKFDPKYLYSGITTPL
NVVYVPGGISTAKSKYKIEIKDISNSTEVDLLTSSLGKAWSMKASPINSSDALLYTFLITSHGIKCKAKEAENVSFTACS
GQGAEDW
Nucleotide
Download Length: 504 bp
>NTDB_id=1002593 ABEF80_RS01910 WP_347456734.1 397077..397580(+) (comE) [Acinetobacter thermotolerans strain ANC 7970]
ATGCACAAATCTAATCATGGTTTTACATTAATCGAGCTTATGGTTGTGGTTGTAATCGTGGCTTTATTAGCCGCGATTGC
ACTGCCTAGTTATCAGCAATACATCAGAAAGAAAGATATGGCACTTGCTCAGCAAGAAATGCTTAAACTAGCAGATCAGC
TAGAAAGACATAAAGCAAAAAATTTTTCTTATAAAAAGTTTGATCCTAAATATCTATATTCTGGAATAACAACGCCATTA
AATGTTGTGTATGTACCTGGTGGAATTTCTACGGCTAAATCCAAATATAAAATTGAGATTAAAGATATAAGTAATTCAAC
GGAAGTGGACTTACTAACATCGAGCTTAGGTAAAGCATGGTCAATGAAAGCTTCTCCTATAAATTCAAGTGACGCATTGC
TTTACACATTTTTAATAACCAGTCATGGTATAAAGTGCAAAGCGAAAGAAGCTGAGAATGTGTCATTTACAGCATGTTCA
GGGCAAGGAGCAGAAGATTGGTAG
ATGCACAAATCTAATCATGGTTTTACATTAATCGAGCTTATGGTTGTGGTTGTAATCGTGGCTTTATTAGCCGCGATTGC
ACTGCCTAGTTATCAGCAATACATCAGAAAGAAAGATATGGCACTTGCTCAGCAAGAAATGCTTAAACTAGCAGATCAGC
TAGAAAGACATAAAGCAAAAAATTTTTCTTATAAAAAGTTTGATCCTAAATATCTATATTCTGGAATAACAACGCCATTA
AATGTTGTGTATGTACCTGGTGGAATTTCTACGGCTAAATCCAAATATAAAATTGAGATTAAAGATATAAGTAATTCAAC
GGAAGTGGACTTACTAACATCGAGCTTAGGTAAAGCATGGTCAATGAAAGCTTCTCCTATAAATTCAAGTGACGCATTGC
TTTACACATTTTTAATAACCAGTCATGGTATAAAGTGCAAAGCGAAAGAAGCTGAGAATGTGTCATTTACAGCATGTTCA
GGGCAAGGAGCAGAAGATTGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Acinetobacter baylyi ADP1 |
46.893 |
100 |
0.497 |
| pilY2 | Acinetobacter baumannii D1279779 |
38.365 |
95.21 |
0.365 |