Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABEF83_RS09565 Genome accession   NZ_CP156768
Coordinates   1955764..1956471 (-) Length   235 a.a.
NCBI ID   WP_347453846.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7974     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1950764..1961471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF83_RS09555 (ABEF83_09555) clpB 1951588..1954167 (-) 2580 WP_347453848.1 ATP-dependent chaperone ClpB -
  ABEF83_RS09560 (ABEF83_09560) - 1954520..1955569 (-) 1050 WP_347453847.1 NADP(H)-dependent aldo-keto reductase -
  ABEF83_RS09565 (ABEF83_09565) crp 1955764..1956471 (-) 708 WP_347453846.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABEF83_RS09570 (ABEF83_09570) - 1956619..1957041 (+) 423 WP_034588106.1 OsmC family protein -
  ABEF83_RS09575 (ABEF83_09575) - 1957120..1958160 (-) 1041 WP_347453845.1 metallophosphoesterase -
  ABEF83_RS09580 (ABEF83_09580) - 1958212..1958469 (-) 258 WP_347453844.1 hypothetical protein -
  ABEF83_RS09585 (ABEF83_09585) - 1958456..1958746 (-) 291 WP_347453843.1 hypothetical protein -
  ABEF83_RS09590 (ABEF83_09590) - 1959040..1961277 (-) 2238 WP_347453842.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26472.11 Da        Isoelectric Point: 4.6167

>NTDB_id=1002555 ABEF83_RS09565 WP_347453846.1 1955764..1956471(-) (crp) [Acinetobacter thermotolerans strain ANC 7974]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEAPAEEEFEEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1002555 ABEF83_RS09565 WP_347453846.1 1955764..1956471(-) (crp) [Acinetobacter thermotolerans strain ANC 7974]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCGCTGTCTCCGGGCCAACTGCCAGAATCGGTGAAAGCATTATTAAA
ACGTGCATATATTAATCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCCAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGACCGTGAAATTGTCGTAGCGTATTTGAATGCGGGTGACTTC
TTTGGAGAAATGGGCTTATTCGAGGCAAATCCACAGCGTACTGCAGAAGTGCGTACACGTGACGTTTGTGAAATTGCCGA
AATTAGCTACGAAAACTTTCATGAACTGAGCAAGCAATATCCAGACTTAAGTTATGCGGTATTTGCCCAGCTGGTTCGCC
GTCTGAAAAACACTACCCGTAAAGTGACCGATCTTGCGTTTATCGACGTATCTGGTCGTATTGCGCGTTGTCTGATTGAT
TTGTCTGCTCAGCCTGAAGCGATGATTCTGCCAAATGGTCGTCAGATCCGGATTACCCGTCAGGAAATCGGTCGTATCGT
GGGCTGTTCCCGTGAAATGGTGGGTCGTGTTCTGAAAACTTTAGAAGAACAGGGCATGATCGAGACCGACGGTAAAGCTA
TTCTGATTTTTGATGCTTCACTGGAACAGAATGAAGCACCTGCTGAGGAAGAGTTTGAAGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.915

100

0.919
  crp Vibrio cholerae strain A1552

47.573

87.66

0.417
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment