Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   CV024_RS14625 Genome accession   NZ_CP156745
Coordinates   3141425..3142075 (+) Length   216 a.a.
NCBI ID   WP_024374534.1    Uniprot ID   -
Organism   Vibrio fluvialis strain QY27     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3136425..3147075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS14610 (CV024_14610) - 3137026..3138474 (-) 1449 WP_100268585.1 MSHA biogenesis protein MshI -
  CV024_RS14615 (CV024_14615) csrD 3138482..3140476 (-) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  CV024_RS14620 (CV024_14620) ssb 3140612..3141142 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  CV024_RS14625 (CV024_14625) qstR 3141425..3142075 (+) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  CV024_RS14630 (CV024_14630) galU 3142203..3143072 (+) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CV024_RS14635 (CV024_14635) uvrA 3143210..3146032 (+) 2823 WP_044364108.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24879.67 Da        Isoelectric Point: 9.2330

>NTDB_id=1002476 CV024_RS14625 WP_024374534.1 3141425..3142075(+) (qstR) [Vibrio fluvialis strain QY27]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1002476 CV024_RS14625 WP_024374534.1 3141425..3142075(+) (qstR) [Vibrio fluvialis strain QY27]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTTGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTACCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGAGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment