Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CV024_RS11130 Genome accession   NZ_CP156745
Coordinates   2379277..2381514 (-) Length   745 a.a.
NCBI ID   WP_081094775.1    Uniprot ID   -
Organism   Vibrio fluvialis strain QY27     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2374277..2386514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS11110 (CV024_11110) kdsB 2375582..2376325 (-) 744 WP_020327783.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CV024_RS11115 (CV024_11115) - 2376325..2376504 (-) 180 WP_020327784.1 Trm112 family protein -
  CV024_RS11120 (CV024_11120) lpxK 2376485..2377492 (-) 1008 WP_061056668.1 tetraacyldisaccharide 4'-kinase -
  CV024_RS11125 (CV024_11125) msbA 2377496..2379244 (-) 1749 WP_020327786.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CV024_RS11130 (CV024_11130) comEC 2379277..2381514 (-) 2238 WP_081094775.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CV024_RS11135 (CV024_11135) - 2381523..2382053 (+) 531 WP_020327788.1 DUF2062 domain-containing protein -
  CV024_RS11140 (CV024_11140) lolE 2382186..2383430 (-) 1245 WP_020327789.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  CV024_RS11145 (CV024_11145) lolD 2383431..2384117 (-) 687 WP_061056669.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CV024_RS11150 (CV024_11150) lolC 2384110..2385318 (-) 1209 WP_055453396.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  CV024_RS11155 (CV024_11155) - 2385494..2386063 (+) 570 WP_024373531.1 hypothetical protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83481.75 Da        Isoelectric Point: 8.6879

>NTDB_id=1002461 CV024_RS11130 WP_081094775.1 2379277..2381514(-) (comEC) [Vibrio fluvialis strain QY27]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMTTLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQQLHTFWQPKVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNFRSMLYRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHI
GMAFAIGYLIGTAMMRLHVSLLWMPFVSGMCIAAIYAWLAGFTLPTQRALLMCGLNVALTMSGVRVTAVQRILITLAAVL
IVTPFAPLSNSFWLSFLAVALVLYQLADRTTRHGWRKWLTVQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLALFLTTFVGDITWLWRGIDLSFWPLQRALEWAGSSWIAVSQTATVVFSVGLLLWVCRPVLSWRAQLYAGIALLGF
GFFTPHDERWRVDILDVGHGLAVLIERNHNALLYDTGSGWPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKD
AETLLSPKWVVASQSGPNWQACHTGEQWEWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIASLAKGNQWQLPHRSVVARYVDAGSDWLDTGEAGQITLTYQAQ
SRQLSTLRQIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=1002461 CV024_RS11130 WP_081094775.1 2379277..2381514(-) (comEC) [Vibrio fluvialis strain QY27]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCCCTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGACCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATCAATGGACAACAATTGCACACTTTTTGGCAGCCGAAGGTGCGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTC
AGTCAGGGTTGGGTTGCGAGAGTGAACGTTAAACCTCAGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTTCGCAGTAT
GTTGTACCGCCAAATCAAAACATGGACGCAAAACAGCCCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCA
ACGGCATTCATGAAGCTGAATGGCGCTCACTGAGAAATAGCGGACTCATCCATCTGGTGGCGATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAACTGCGATGATGCGGCTGCATGTCAGTTTGCTGTGGATGCCTTTCGT
TTCCGGGATGTGTATTGCCGCGATTTATGCATGGCTGGCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCG
GTCTCAACGTCGCTCTCACGATGAGTGGCGTGCGTGTGACGGCGGTGCAGCGAATCCTTATCACCCTTGCTGCGGTATTA
ATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACACGCCATGGCTGGCGAAAATGGCTGACGGTGCAATGCTCGTTAGTCACTATGATGATTCCAGTTTCCG
CGTATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACTCTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTC
CCGCTGCTGTTTCTCGCACTGTTTCTCACTACCTTTGTCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTT
CTGGCCACTGCAGCGGGCACTGGAATGGGCGGGATCGAGCTGGATTGCTGTAAGTCAGACGGCGACGGTCGTATTTAGTG
TTGGCCTTCTCCTTTGGGTTTGCCGCCCGGTATTAAGCTGGCGAGCTCAACTCTATGCGGGAATTGCATTACTTGGCTTT
GGCTTTTTTACCCCACACGATGAGCGTTGGCGAGTTGATATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACG
GAATCACAACGCCCTGTTGTACGACACCGGCAGTGGCTGGCCTGAAGGCAGTTACGTTCGCTCTTTGATTGTTCCAATAC
TCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAATTCTCAGCCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGAGTCAGTCTGGTCCAAATTGGCAGGCTTGCCACACGGGAGAACA
GTGGGAATGGCAAGGACTGACGATGACGGCACTGTGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAACCCATGGATATTCAGAGCGATGTCATCATTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTT
TATCGAGCGGGTTTCCCCGCAAGTGGCCATTGCGTCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATGTGGATGCGGGGTCCGACTGGCTTGATACTGGCGAGGCGGGGCAAATCACTCTGACTTATCAAGCTCAA
TCCCGGCAGCTATCGACTCTGCGCCAAATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)

Competence protein (Competence)

(208-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.6

100

0.54
  comEC Vibrio parahaemolyticus RIMD 2210633

42.497

100

0.43
  comEC Vibrio campbellii strain DS40M4

41.402

100

0.42

Multiple sequence alignment