Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CV024_RS02445 Genome accession   NZ_CP156745
Coordinates   515677..516189 (+) Length   170 a.a.
NCBI ID   WP_020429290.1    Uniprot ID   A0AAX2LJQ5
Organism   Vibrio fluvialis strain QY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510677..521189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS02425 (CV024_02425) - 510897..513377 (-) 2481 WP_100267594.1 PBP1A family penicillin-binding protein -
  CV024_RS02430 (CV024_02430) pilM 513520..514524 (+) 1005 WP_100267595.1 type IV pilus assembly protein PilM Machinery gene
  CV024_RS02435 (CV024_02435) pilN 514514..515104 (+) 591 WP_100267596.1 PilN domain-containing protein Machinery gene
  CV024_RS02440 (CV024_02440) pilO 515097..515687 (+) 591 WP_020429291.1 type 4a pilus biogenesis protein PilO Machinery gene
  CV024_RS02445 (CV024_02445) pilP 515677..516189 (+) 513 WP_020429290.1 pilus assembly protein PilP Machinery gene
  CV024_RS02450 (CV024_02450) pilQ 516214..517950 (+) 1737 WP_257937331.1 type IV pilus secretin PilQ family protein Machinery gene
  CV024_RS02455 (CV024_02455) aroK 518138..518656 (+) 519 WP_004728569.1 shikimate kinase AroK -
  CV024_RS02460 (CV024_02460) aroB 518684..519769 (+) 1086 WP_020329448.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19055.99 Da        Isoelectric Point: 10.0588

>NTDB_id=1002447 CV024_RS02445 WP_020429290.1 515677..516189(+) (pilP) [Vibrio fluvialis strain QY27]
MKNKRCWLLGALLLSGCKANQESLSDYVKHVEQQAQREVATLAPVVQFDVFHYAQHHQREPFVLPQEALVQNQPRMKSDC
WQPSPRAKSGSLERYPLSQLRLRGVMSSGGSVSALIQTPQGSVMKIKAGQYLGLNNGRVTRVADDYLLIKETLPDGLGCW
NQRNVKLALK

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1002447 CV024_RS02445 WP_020429290.1 515677..516189(+) (pilP) [Vibrio fluvialis strain QY27]
ATGAAAAATAAGCGCTGCTGGCTGTTAGGAGCACTACTGCTCAGTGGTTGTAAAGCCAATCAGGAGTCGCTGTCCGATTA
CGTTAAACACGTCGAACAGCAGGCGCAGCGTGAAGTGGCGACACTGGCACCGGTAGTTCAGTTCGACGTGTTTCATTATG
CCCAACATCATCAGCGTGAGCCGTTTGTCTTGCCTCAGGAAGCGCTGGTGCAAAACCAGCCGCGAATGAAATCGGATTGC
TGGCAACCTTCACCGCGCGCCAAAAGTGGTTCGCTGGAGCGTTACCCTCTCAGTCAACTGCGTTTACGAGGTGTCATGAG
CAGTGGTGGCTCTGTCTCCGCGTTGATTCAAACGCCGCAAGGTTCGGTAATGAAAATTAAAGCAGGACAGTACCTGGGAT
TGAACAACGGTCGAGTGACCCGCGTGGCAGACGATTATCTGCTGATCAAAGAGACCCTGCCGGATGGATTGGGATGTTGG
AATCAACGTAACGTTAAATTGGCTTTGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

69.767

100

0.706
  pilP Vibrio campbellii strain DS40M4

54.971

100

0.553

Multiple sequence alignment