Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | CV024_RS02435 | Genome accession | NZ_CP156745 |
| Coordinates | 514514..515104 (+) | Length | 196 a.a. |
| NCBI ID | WP_100267596.1 | Uniprot ID | - |
| Organism | Vibrio fluvialis strain QY27 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 509514..520104
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV024_RS02420 (CV024_02420) | oxyR | 509940..510836 (+) | 897 | WP_020329438.1 | DNA-binding transcriptional regulator OxyR | - |
| CV024_RS02425 (CV024_02425) | - | 510897..513377 (-) | 2481 | WP_100267594.1 | PBP1A family penicillin-binding protein | - |
| CV024_RS02430 (CV024_02430) | pilM | 513520..514524 (+) | 1005 | WP_100267595.1 | type IV pilus assembly protein PilM | Machinery gene |
| CV024_RS02435 (CV024_02435) | pilN | 514514..515104 (+) | 591 | WP_100267596.1 | PilN domain-containing protein | Machinery gene |
| CV024_RS02440 (CV024_02440) | pilO | 515097..515687 (+) | 591 | WP_020429291.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CV024_RS02445 (CV024_02445) | pilP | 515677..516189 (+) | 513 | WP_020429290.1 | pilus assembly protein PilP | Machinery gene |
| CV024_RS02450 (CV024_02450) | pilQ | 516214..517950 (+) | 1737 | WP_257937331.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CV024_RS02455 (CV024_02455) | aroK | 518138..518656 (+) | 519 | WP_004728569.1 | shikimate kinase AroK | - |
| CV024_RS02460 (CV024_02460) | aroB | 518684..519769 (+) | 1086 | WP_020329448.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22258.64 Da Isoelectric Point: 9.5537
>NTDB_id=1002445 CV024_RS02435 WP_100267596.1 514514..515104(+) (pilN) [Vibrio fluvialis strain QY27]
MLHNINLIPWREAQREAHKRRFVGLCVLALMVALGVQWGAGFYLDQQTQAQQQRLAFLNQHIHQLDAQIAELKVTEQEHK
ALLTRLNIVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGEEIEISGISDSTARLATMLDNLEKSTQLSEVGMHSIV
SGNRRFGKQFQSFKVSFLFHASAHKPLATVTGEKHG
MLHNINLIPWREAQREAHKRRFVGLCVLALMVALGVQWGAGFYLDQQTQAQQQRLAFLNQHIHQLDAQIAELKVTEQEHK
ALLTRLNIVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGEEIEISGISDSTARLATMLDNLEKSTQLSEVGMHSIV
SGNRRFGKQFQSFKVSFLFHASAHKPLATVTGEKHG
Nucleotide
Download Length: 591 bp
>NTDB_id=1002445 CV024_RS02435 WP_100267596.1 514514..515104(+) (pilN) [Vibrio fluvialis strain QY27]
ATGCTGCATAACATCAACCTTATTCCCTGGCGGGAAGCGCAGCGCGAGGCGCACAAACGCCGCTTCGTCGGACTGTGCGT
GCTCGCGCTGATGGTGGCATTGGGCGTGCAGTGGGGCGCTGGCTTTTATCTCGATCAGCAAACTCAGGCTCAGCAGCAGC
GACTGGCATTTCTCAATCAGCACATTCACCAACTGGATGCGCAGATTGCCGAGCTGAAAGTGACCGAGCAAGAACATAAA
GCGCTGCTGACCCGGCTCAATATCGTCGAATCGTTACAGCAAAAGCGCAATAAGACCACAGAGTTCATGAACCTGATGCC
GCAACTGATTCCGGAAGGTGTCTACGTCGACAAGATCAAAATGAATGGCGAAGAAATTGAAATCAGCGGCATCAGTGACA
GTACTGCCCGACTCGCCACCATGCTCGACAATCTGGAAAAATCCACCCAACTGTCTGAGGTCGGTATGCATTCGATCGTG
TCAGGTAATCGACGTTTTGGTAAACAATTTCAGAGCTTTAAGGTGTCATTTCTGTTTCATGCGTCAGCTCATAAACCGCT
CGCCACCGTGACAGGAGAGAAACATGGCTAA
ATGCTGCATAACATCAACCTTATTCCCTGGCGGGAAGCGCAGCGCGAGGCGCACAAACGCCGCTTCGTCGGACTGTGCGT
GCTCGCGCTGATGGTGGCATTGGGCGTGCAGTGGGGCGCTGGCTTTTATCTCGATCAGCAAACTCAGGCTCAGCAGCAGC
GACTGGCATTTCTCAATCAGCACATTCACCAACTGGATGCGCAGATTGCCGAGCTGAAAGTGACCGAGCAAGAACATAAA
GCGCTGCTGACCCGGCTCAATATCGTCGAATCGTTACAGCAAAAGCGCAATAAGACCACAGAGTTCATGAACCTGATGCC
GCAACTGATTCCGGAAGGTGTCTACGTCGACAAGATCAAAATGAATGGCGAAGAAATTGAAATCAGCGGCATCAGTGACA
GTACTGCCCGACTCGCCACCATGCTCGACAATCTGGAAAAATCCACCCAACTGTCTGAGGTCGGTATGCATTCGATCGTG
TCAGGTAATCGACGTTTTGGTAAACAATTTCAGAGCTTTAAGGTGTCATTTCTGTTTCATGCGTCAGCTCATAAACCGCT
CGCCACCGTGACAGGAGAGAAACATGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
69.149 |
95.918 |
0.663 |
| pilN | Vibrio campbellii strain DS40M4 |
61.735 |
100 |
0.617 |