Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EL199_RS08880 Genome accession   NZ_LR134365
Coordinates   1815382..1815975 (+) Length   197 a.a.
NCBI ID   WP_004142185.1    Uniprot ID   C8NBZ3
Organism   Cardiobacterium hominis strain NCTC10426     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1810382..1820975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL199_RS08850 (NCTC10426_01719) gmk 1810451..1811065 (+) 615 WP_004142192.1 guanylate kinase -
  EL199_RS08855 (NCTC10426_01720) dctP 1811119..1812099 (-) 981 WP_004142191.1 TRAP transporter substrate-binding protein DctP -
  EL199_RS08860 (NCTC10426_01721) - 1812112..1813308 (-) 1197 WP_004142190.1 PstS family phosphate ABC transporter substrate-binding protein -
  EL199_RS08865 (NCTC10426_01722) - 1813491..1813886 (+) 396 WP_004142189.1 DMT family transporter -
  EL199_RS13010 - 1813914..1814072 (+) 159 WP_004142188.1 hypothetical protein -
  EL199_RS08870 (NCTC10426_01723) - 1814118..1814852 (+) 735 WP_004142187.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EL199_RS08875 (NCTC10426_01724) ruvC 1814857..1815381 (+) 525 WP_004142186.1 crossover junction endodeoxyribonuclease RuvC -
  EL199_RS08880 (NCTC10426_01725) ruvA 1815382..1815975 (+) 594 WP_004142185.1 Holliday junction branch migration protein RuvA Machinery gene
  EL199_RS08885 (NCTC10426_01726) ruvB 1815972..1816982 (+) 1011 WP_004142184.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  EL199_RS08890 (NCTC10426_01727) tolQ 1817044..1817775 (+) 732 WP_004142182.1 protein TolQ -
  EL199_RS08895 (NCTC10426_01728) - 1817772..1818236 (+) 465 WP_004142181.1 ExbD/TolR family protein -
  EL199_RS08900 (NCTC10426_01729) tolA 1818233..1819834 (+) 1602 WP_004142179.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21347.59 Da        Isoelectric Point: 6.6519

>NTDB_id=1002445 EL199_RS08880 WP_004142185.1 1815382..1815975(+) (ruvA) [Cardiobacterium hominis strain NCTC10426]
MIAYLRGTVLVKQAGQIILETGGVGYELAVPLSVLERVHEGQEAALFVHHAVRDDGHYLYGFHTLEQRSWFRELIRVSGI
GPKIALLILSGFDVEMLAQTVRAQDSAALVKLPGVGKKTAERLLVELNDRVGRLPTAGGAGQGSILRPASARLDAEEALV
ALGYKPAEAAQLIERVGDDDADTDTLIRRALQLKFKT

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1002445 EL199_RS08880 WP_004142185.1 1815382..1815975(+) (ruvA) [Cardiobacterium hominis strain NCTC10426]
ATGATCGCCTATCTGCGCGGCACGGTGCTGGTCAAACAGGCCGGGCAAATCATCCTTGAAACCGGCGGCGTCGGCTACGA
ACTGGCGGTGCCGCTGTCCGTGCTGGAGCGCGTGCATGAGGGGCAGGAAGCGGCGCTGTTTGTCCATCATGCGGTGCGCG
ACGACGGCCATTACCTCTACGGTTTTCACACCCTGGAACAGCGCAGCTGGTTCCGCGAACTCATCCGCGTCAGCGGTATC
GGCCCAAAAATCGCCCTGCTCATCCTCTCCGGTTTCGACGTGGAAATGCTAGCGCAGACCGTGCGCGCGCAAGACAGCGC
CGCGCTGGTAAAACTGCCCGGCGTCGGCAAGAAAACCGCCGAGCGCCTTTTGGTGGAATTAAATGACCGCGTCGGCAGAT
TGCCCACCGCGGGCGGGGCAGGGCAGGGCAGTATCCTGCGCCCGGCTTCCGCGCGGCTGGACGCCGAAGAAGCGCTGGTC
GCGCTGGGCTACAAACCGGCAGAAGCGGCGCAACTCATCGAGCGCGTCGGCGATGATGACGCCGACACCGACACCCTTAT
CCGTCGCGCCCTGCAACTCAAATTCAAAACATGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-193)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C8NBZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

36.816

100

0.376
  ruvA Streptococcus pneumoniae D39

36.816

100

0.376
  ruvA Streptococcus pneumoniae TIGR4

36.816

100

0.376

Multiple sequence alignment