Detailed information NTG1002444

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: CV024_RS02430
• Genome accession: NZ_CP156745
• Coordinates: 513520..514524 (+)
• Length: 334 a.a.
• NCBI ID: WP_100267595.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain QY27
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 508520..519524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV024_RS02410 (CV024_02410)	-	508670..508933 (-)	264	WP_020429299.1	DUF3624 domain-containing protein	-
CV024_RS02415 (CV024_02415)	-	509062..509796 (-)	735	WP_100267593.1	glutathione peroxidase	-
CV024_RS02420 (CV024_02420)	oxyR	509940..510836 (+)	897	WP_020329438.1	DNA-binding transcriptional regulator OxyR	-
CV024_RS02425 (CV024_02425)	-	510897..513377 (-)	2481	WP_100267594.1	PBP1A family penicillin-binding protein	-
CV024_RS02430 (CV024_02430)	pilM	513520..514524 (+)	1005	WP_100267595.1	type IV pilus assembly protein PilM	Machinery gene
CV024_RS02435 (CV024_02435)	pilN	514514..515104 (+)	591	WP_100267596.1	PilN domain-containing protein	Machinery gene
CV024_RS02440 (CV024_02440)	pilO	515097..515687 (+)	591	WP_020429291.1	type 4a pilus biogenesis protein PilO	Machinery gene
CV024_RS02445 (CV024_02445)	pilP	515677..516189 (+)	513	WP_020429290.1	pilus assembly protein PilP	Machinery gene
CV024_RS02450 (CV024_02450)	pilQ	516214..517950 (+)	1737	WP_257937331.1	type IV pilus secretin PilQ family protein	Machinery gene
CV024_RS02455 (CV024_02455)	aroK	518138..518656 (+)	519	WP_004728569.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36895.25 Da
• Isoelectric Point: 6.6595

>NTDB_id=1002444 CV024_RS02430 WP_100267595.1 513520..514524(+) (pilM) [Vibrio fluvialis strain QY27]
MGKSLVTGVDIGHHSIKAVVLKPKGESYSLVGYQEIVVSEDIFADNHTLNYQKIVKKLKELKKGLPLFSRKVALAVPDNA
VISKVLQIDSELDASEQEFAVYQAFSHQSPLPIEELSLDFVVTGEKTLGRSSSLTYQVYATRREVIDNRLSAMSKAGFEP
LLFDMQIHGLLNIWQWVSRAQQRTDWMLVDVGFSQTSLCIDFADKTPFYKDIPLGTRQLVAATSGGNADLTSPQAHFIQE
LVERLARQIQLFLSLQGHQPLAGIWLSGGGAATEGLAQAISERLVLPCELFNPLAEFTCRASLRHHPQVDLQRFSTAAGL
ALRGLNWLENGHAA

Nucleotide

• Length: 1005 bp

>NTDB_id=1002444 CV024_RS02430 WP_100267595.1 513520..514524(+) (pilM) [Vibrio fluvialis strain QY27]
ATGGGTAAATCATTAGTTACAGGTGTCGATATTGGCCACCACAGTATTAAAGCGGTGGTTTTAAAACCGAAAGGCGAATC
ATATTCGCTGGTCGGTTACCAAGAGATAGTCGTATCCGAGGATATTTTCGCTGATAACCACACGCTGAATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGGATTACCGCTATTTAGTCGTAAAGTGGCGCTGGCTGTACCGGACAACGCA
GTAATAAGTAAGGTATTACAGATAGATAGCGAACTGGATGCCAGCGAACAAGAGTTCGCGGTCTATCAGGCTTTTTCCCA
TCAATCGCCGCTACCCATCGAAGAGTTGAGCCTGGATTTCGTTGTCACCGGAGAAAAAACACTGGGGCGCAGCAGTTCGT
TGACGTATCAGGTCTATGCAACCCGACGTGAAGTGATCGACAACCGTTTGTCTGCGATGAGCAAAGCGGGTTTTGAGCCG
CTGCTGTTTGATATGCAGATTCACGGCCTGCTCAATATCTGGCAATGGGTCAGCCGTGCTCAGCAACGCACCGATTGGAT
GCTGGTCGATGTCGGGTTCAGCCAAACCTCATTGTGCATCGACTTTGCCGATAAAACGCCGTTTTACAAAGACATTCCGT
TGGGAACCCGCCAACTGGTTGCGGCGACCTCCGGTGGTAACGCTGACCTTACCAGCCCGCAAGCACACTTCATTCAGGAG
TTGGTTGAGCGTCTGGCGCGCCAGATCCAGCTGTTTCTTTCTCTGCAAGGCCATCAACCGCTGGCCGGTATCTGGCTATC
CGGTGGCGGCGCGGCAACGGAAGGTTTGGCGCAGGCGATTAGCGAACGTCTGGTTCTGCCTTGCGAGCTGTTTAACCCTC
TGGCGGAGTTTACTTGCCGCGCATCGCTACGCCACCATCCTCAGGTTGATTTGCAGCGTTTTAGCACTGCGGCAGGCTTG
GCGCTGCGCGGGCTCAATTGGCTGGAGAACGGCCATGCTGCATAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (237-324)

• Type IV pilus assembly protein PilM; (PilM_2) (8-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	65.68	100	0.665
pilM	Vibrio campbellii strain DS40M4	47.826	100	0.494