Detailed information NTG1002408

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: EL177_RS12310
• Genome accession: NZ_LR134358
• Coordinates: 2053444..2054028 (-)
• Length: 194 a.a.
• NCBI ID: WP_003689924.1
• Uniprot ID: Q5F636
• Organism: Neisseria gonorrhoeae strain NCTC13484
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2048444..2059028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL177_RS12280 (NCTC13484_02112)	-	2048864..2049163 (+)	300	WP_010359269.1	DUF2818 family protein	-
EL177_RS12285 (NCTC13484_02113)	-	2049280..2050176 (-)	897	WP_003691917.1	polyprenyl synthetase family protein	-
EL177_RS12290 (NCTC13484_02114)	-	2050160..2050384 (-)	225	WP_003689929.1	exodeoxyribonuclease VII small subunit	-
EL177_RS12295 (NCTC13484_02115)	rsgA	2050497..2051420 (-)	924	WP_003689928.1	ribosome small subunit-dependent GTPase A	-
EL177_RS12300 (NCTC13484_02116)	-	2051425..2053281 (-)	1857	WP_041421450.1	ABC transporter ATP-binding protein	-
EL177_RS12305 (NCTC13484_02117)	-	2053307..2053444 (-)	138	WP_003689926.1	hypothetical protein	-
EL177_RS12310 (NCTC13484_02118)	ruvA	2053444..2054028 (-)	585	WP_003689924.1	Holliday junction branch migration protein RuvA	Machinery gene
EL177_RS12315 (NCTC13484_02119)	-	2054110..2054436 (-)	327	WP_003689921.1	PepSY domain-containing protein	-
EL177_RS12320 (NCTC13484_02120)	-	2054497..2055183 (-)	687	WP_003689919.1	septal ring lytic transglycosylase RlpA family protein	-
EL177_RS12330 (NCTC13484_02121)	trmL	2055311..2055775 (-)	465	WP_003689916.1	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	-
EL177_RS12335 (NCTC13484_02122)	-	2055840..2056565 (-)	726	WP_003689912.1	ComF family protein	-
EL177_RS12340 (NCTC13484_02123)	bioH	2056564..2057313 (+)	750	WP_010360850.1	pimeloyl-ACP methyl ester esterase BioH	-
EL177_RS12345 (NCTC13484_02124)	-	2057310..2058098 (+)	789	WP_047923707.1	class I SAM-dependent methyltransferase	-
EL177_RS13560	-	2058179..2058289 (-)	111	Protein_2102	IS5/IS1182 family transposase	-

Sequence

Protein

• Length: 194 a.a.
• Molecular weight: 20729.99 Da
• Isoelectric Point: 6.4967

>NTDB_id=1002408 EL177_RS12310 WP_003689924.1 2053444..2054028(-) (ruvA) [Neisseria gonorrhoeae strain NCTC13484]
MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGG
IGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAASPAADETEDIVSTLLA
LGYNEREAKAAVKGVPKGTDVGEGVRLALKNLLK

Nucleotide

• Length: 585 bp

>NTDB_id=1002408 EL177_RS12310 WP_003689924.1 2053444..2054028(-) (ruvA) [Neisseria gonorrhoeae strain NCTC13484]
ATGATCAGCAGACTGACCGGCAAACTGGTTGAAAAAAACCCTCCGCAAATCGTCATCGATGTCAACGGTGTCGGTTATGA
AGCCGACGTATCGATGCAGACCTTCTACAACCTGCCGCCCGTGGGTGAAAGCGTACAACTGTTTACCCAGCTTATCATTC
GGGAAGACGCACATCTTTTATTTGGTTTTGCCACTGCGGAAGAACGCAAGACCTTCCGCCAACTGATTAAGGTCGGCGGC
ATCGGCGCGAAAACGGCTTTGGGCATTTTGTCGGCGATGACGGCAGACGAGCTGGCGCGGGCGGTTGCAGAAGAAGATGT
CAAACGCCTCTCCTCCGCTCCGGGAATCGGCAAAAAAACCGCCGAACGTATGGTCTTGGAACTGCGCGGCAAGCTGGTCG
CGCATACGGTAACGGACGGGCTGTTTGCCGCCTCACCCGCCGCCGACGAAACGGAAGACATCGTCAGCACGCTGCTTGCG
CTGGGTTACAACGAACGCGAGGCAAAAGCGGCGGTCAAAGGCGTTCCGAAGGGGACGGACGTGGGCGAAGGCGTGCGCCT
TGCCCTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (72-129)

• RuvA N terminal domain (RuvA_N) (1-62)

• RuvA, C-terminal domain (RuvA_C) (150-192)

3D structure

• AlphaFold DB: Q5F636

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae R6	38	100	0.392
ruvA	Streptococcus pneumoniae D39	38	100	0.392
ruvA	Streptococcus pneumoniae TIGR4	37.5	100	0.387
ruvA	Bacillus subtilis subsp. subtilis str. 168	34.951	100	0.371