Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABFY42_RS18185 Genome accession   NZ_CP156682
Coordinates   3657551..3658240 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain B115     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3652551..3663240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFY42_RS18150 (ABFY42_18150) - 3652749..3653231 (-) 483 WP_022553865.1 flagellar protein FlgN -
  ABFY42_RS18155 (ABFY42_18155) flgM 3653246..3653512 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABFY42_RS18160 (ABFY42_18160) - 3653582..3654001 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ABFY42_RS18165 (ABFY42_18165) comFC 3654075..3654764 (-) 690 WP_197538213.1 ComF family protein Machinery gene
  ABFY42_RS18170 (ABFY42_18170) - 3654770..3655054 (-) 285 WP_022553866.1 competence protein ComFB -
  ABFY42_RS18175 (ABFY42_18175) comFA 3655112..3656497 (-) 1386 WP_022553867.1 DEAD/DEAH box helicase Machinery gene
  ABFY42_RS18180 (ABFY42_18180) - 3656605..3657453 (-) 849 WP_003151387.1 DegV family protein -
  ABFY42_RS18185 (ABFY42_18185) degU 3657551..3658240 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABFY42_RS18190 (ABFY42_18190) degS 3658317..3659480 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABFY42_RS18195 (ABFY42_18195) - 3659703..3660350 (+) 648 WP_007407485.1 YigZ family protein -
  ABFY42_RS18200 (ABFY42_18200) - 3660355..3661569 (+) 1215 WP_022553868.1 LCP family protein -
  ABFY42_RS18205 (ABFY42_18205) - 3661669..3662745 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1002120 ABFY42_RS18185 WP_003219701.1 3657551..3658240(-) (degU) [Bacillus velezensis strain B115]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1002120 ABFY42_RS18185 WP_003219701.1 3657551..3658240(-) (degU) [Bacillus velezensis strain B115]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment