Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABFY42_RS18175 Genome accession   NZ_CP156682
Coordinates   3655112..3656497 (-) Length   461 a.a.
NCBI ID   WP_022553867.1    Uniprot ID   -
Organism   Bacillus velezensis strain B115     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3650112..3661497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFY42_RS18140 (ABFY42_18140) flgL 3650287..3651204 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ABFY42_RS18145 (ABFY42_18145) flgK 3651216..3652733 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  ABFY42_RS18150 (ABFY42_18150) - 3652749..3653231 (-) 483 WP_022553865.1 flagellar protein FlgN -
  ABFY42_RS18155 (ABFY42_18155) flgM 3653246..3653512 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABFY42_RS18160 (ABFY42_18160) - 3653582..3654001 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ABFY42_RS18165 (ABFY42_18165) comFC 3654075..3654764 (-) 690 WP_197538213.1 ComF family protein Machinery gene
  ABFY42_RS18170 (ABFY42_18170) - 3654770..3655054 (-) 285 WP_022553866.1 competence protein ComFB -
  ABFY42_RS18175 (ABFY42_18175) comFA 3655112..3656497 (-) 1386 WP_022553867.1 DEAD/DEAH box helicase Machinery gene
  ABFY42_RS18180 (ABFY42_18180) - 3656605..3657453 (-) 849 WP_003151387.1 DegV family protein -
  ABFY42_RS18185 (ABFY42_18185) degU 3657551..3658240 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABFY42_RS18190 (ABFY42_18190) degS 3658317..3659480 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABFY42_RS18195 (ABFY42_18195) - 3659703..3660350 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52705.20 Da        Isoelectric Point: 10.3124

>NTDB_id=1002119 ABFY42_RS18175 WP_022553867.1 3655112..3656497(-) (comFA) [Bacillus velezensis strain B115]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESVLVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1002119 ABFY42_RS18175 WP_022553867.1 3655112..3656497(-) (comFA) [Bacillus velezensis strain B115]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGTGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment