Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EL140_RS08875 Genome accession   NZ_LR134336
Coordinates   1782851..1783444 (-) Length   197 a.a.
NCBI ID   WP_000273401.1    Uniprot ID   -
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1777851..1788444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS08845 (NCTC11427_01749) - 1778802..1779479 (+) 678 WP_000078003.1 DUF1129 domain-containing protein -
  EL140_RS08850 (NCTC11427_01750) - 1779495..1779842 (+) 348 WP_000331830.1 TfoX/Sxy family protein -
  EL140_RS08855 (NCTC11427_01751) - 1780163..1781197 (+) 1035 WP_025169048.1 S66 family peptidase -
  EL140_RS08860 (NCTC11427_01752) - 1781271..1781534 (+) 264 WP_000166112.1 SemiSWEET family transporter -
  EL140_RS08865 (NCTC11427_01753) - 1781606..1782280 (-) 675 WP_000987418.1 CPBP family intramembrane glutamic endopeptidase -
  EL140_RS08870 (NCTC11427_01754) - 1782281..1782841 (-) 561 WP_001126059.1 DNA-3-methyladenine glycosylase I -
  EL140_RS08875 (NCTC11427_01755) ruvA 1782851..1783444 (-) 594 WP_000273401.1 Holliday junction branch migration protein RuvA Machinery gene
  EL140_RS08880 (NCTC11427_01756) - 1783603..1784100 (+) 498 WP_000761362.1 helix-turn-helix domain-containing protein -
  EL140_RS08885 (NCTC11427_01757) hexB 1784253..1786202 (-) 1950 WP_000018214.1 DNA mismatch repair endonuclease MutL Machinery gene
  EL140_RS08890 (NCTC11427_01758) - 1786411..1786851 (+) 441 WP_000861947.1 LytTR family DNA-binding domain-containing protein -
  EL140_RS08895 (NCTC11427_01759) - 1786848..1787306 (+) 459 WP_000743977.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21754.21 Da        Isoelectric Point: 6.2573

>NTDB_id=1002040 EL140_RS08875 WP_000273401.1 1782851..1783444(-) (ruvA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MYEYLKGIITKITAKYIILEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPSKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1002040 EL140_RS08875 WP_000273401.1 1782851..1783444(-) (ruvA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGTACGAATATTTAAAAGGAATCATTACCAAAATCACTGCTAAATATATCATCCTTGAGGCAAATGGTATCGGTTATAT
CTTGCATGTAGCCAATCCCTATGCCTACTCAGGTCAGGTCAATCAAGAAACTCAGATTTATGTGCACCAAGTTGTTCGTG
AGGATGCCCATCTGCTCTACGGTTTTCGCTCAGAAGATGAGAAAAAGCTCTTTCTCAGTCTGATCTCGGTCTCAGGGATT
GGTCCTGTGTCAGCTCTTGCTATCATCGCAGCTGATGACAATGCTGGCTTGGTTCAAGCGATCGAGACTAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTCGTGG
CTAGTGATGACCTTCCTTCCAAGGTCGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
CTGGCACTGGGCTACAAGGCGACTGAACTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACGGATACAGCAGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

96.447

100

0.964
  ruvA Streptococcus pneumoniae R6

95.939

100

0.959
  ruvA Streptococcus pneumoniae D39

95.939

100

0.959
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421