Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABFG96_RS03910 | Genome accession | NZ_CP156667 |
| Coordinates | 775526..775999 (+) | Length | 157 a.a. |
| NCBI ID | WP_347553655.1 | Uniprot ID | - |
| Organism | Pediococcus pentosaceus strain MIANGUAN | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 763405..803410 | 775526..775999 | within | 0 |
Gene organization within MGE regions
Location: 763405..803410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFG96_RS03820 (ABFG96_03820) | - | 763405..764577 (-) | 1173 | WP_322164340.1 | site-specific integrase | - |
| ABFG96_RS03825 (ABFG96_03825) | - | 764832..765641 (-) | 810 | WP_199874664.1 | DUF3037 domain-containing protein | - |
| ABFG96_RS03830 (ABFG96_03830) | - | 765643..766434 (-) | 792 | WP_347553667.1 | HipA family kinase | - |
| ABFG96_RS03835 (ABFG96_03835) | - | 766515..766976 (-) | 462 | WP_229568445.1 | hypothetical protein | - |
| ABFG96_RS03840 (ABFG96_03840) | - | 767123..767908 (-) | 786 | WP_239961059.1 | DUF4352 domain-containing protein | - |
| ABFG96_RS03845 (ABFG96_03845) | - | 768050..769309 (-) | 1260 | WP_347553650.1 | NINE protein | - |
| ABFG96_RS03850 (ABFG96_03850) | - | 769367..769774 (-) | 408 | WP_199874661.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ABFG96_RS03855 (ABFG96_03855) | - | 769786..770160 (-) | 375 | WP_230491138.1 | helix-turn-helix transcriptional regulator | - |
| ABFG96_RS03860 (ABFG96_03860) | - | 770331..770549 (+) | 219 | WP_229564764.1 | helix-turn-helix transcriptional regulator | - |
| ABFG96_RS03865 (ABFG96_03865) | - | 770583..770753 (+) | 171 | WP_195748902.1 | hypothetical protein | - |
| ABFG96_RS03870 (ABFG96_03870) | - | 770827..771285 (+) | 459 | WP_229564423.1 | helix-turn-helix transcriptional regulator | - |
| ABFG96_RS03875 (ABFG96_03875) | - | 771286..771561 (+) | 276 | WP_347553651.1 | helix-turn-helix domain-containing protein | - |
| ABFG96_RS03880 (ABFG96_03880) | - | 771799..772080 (+) | 282 | WP_347553652.1 | hypothetical protein | - |
| ABFG96_RS03885 (ABFG96_03885) | - | 772073..772924 (+) | 852 | WP_138428639.1 | RecT family recombinase | - |
| ABFG96_RS03890 (ABFG96_03890) | - | 772884..773711 (+) | 828 | WP_347553653.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| ABFG96_RS03895 (ABFG96_03895) | - | 773721..774551 (+) | 831 | WP_347553654.1 | helix-turn-helix domain-containing protein | - |
| ABFG96_RS03900 (ABFG96_03900) | - | 774555..775247 (+) | 693 | WP_159276375.1 | putative HNHc nuclease | - |
| ABFG96_RS03905 (ABFG96_03905) | - | 775225..775533 (+) | 309 | WP_159276377.1 | hypothetical protein | - |
| ABFG96_RS03910 (ABFG96_03910) | ssb | 775526..775999 (+) | 474 | WP_347553655.1 | single-stranded DNA-binding protein | Machinery gene |
| ABFG96_RS03915 (ABFG96_03915) | - | 776149..776466 (+) | 318 | WP_347553656.1 | DeoR family transcriptional regulator | - |
| ABFG96_RS03920 (ABFG96_03920) | - | 776469..776636 (+) | 168 | WP_155266534.1 | hypothetical protein | - |
| ABFG96_RS03925 (ABFG96_03925) | - | 776629..776826 (+) | 198 | WP_347553657.1 | DUF6877 family protein | - |
| ABFG96_RS03930 (ABFG96_03930) | - | 776901..777143 (+) | 243 | WP_347553658.1 | hypothetical protein | - |
| ABFG96_RS03935 (ABFG96_03935) | - | 777515..777958 (+) | 444 | WP_347553659.1 | hypothetical protein | - |
| ABFG96_RS03945 (ABFG96_03945) | - | 778364..778957 (+) | 594 | WP_159276389.1 | hypothetical protein | - |
| ABFG96_RS03950 (ABFG96_03950) | - | 779243..779920 (+) | 678 | WP_347553660.1 | terminase small subunit | - |
| ABFG96_RS03955 (ABFG96_03955) | - | 779926..781290 (+) | 1365 | WP_239961068.1 | PBSX family phage terminase large subunit | - |
| ABFG96_RS03960 (ABFG96_03960) | - | 781293..782840 (+) | 1548 | WP_347553661.1 | phage portal protein | - |
| ABFG96_RS03965 (ABFG96_03965) | - | 782837..783970 (+) | 1134 | WP_347553662.1 | phage minor capsid protein | - |
| ABFG96_RS03970 (ABFG96_03970) | - | 784070..784627 (+) | 558 | WP_270217229.1 | phage scaffolding protein | - |
| ABFG96_RS03975 (ABFG96_03975) | - | 784640..785551 (+) | 912 | WP_270217228.1 | hypothetical protein | - |
| ABFG96_RS03980 (ABFG96_03980) | - | 785652..786068 (+) | 417 | WP_270217226.1 | hypothetical protein | - |
| ABFG96_RS03985 (ABFG96_03985) | - | 786065..786412 (+) | 348 | WP_270217225.1 | putative minor capsid protein | - |
| ABFG96_RS03990 (ABFG96_03990) | - | 786412..786762 (+) | 351 | WP_347553663.1 | minor capsid protein | - |
| ABFG96_RS03995 (ABFG96_03995) | - | 786749..787144 (+) | 396 | WP_270217223.1 | minor capsid protein | - |
| ABFG96_RS04000 (ABFG96_04000) | - | 787148..787690 (+) | 543 | WP_270217222.1 | capsid protein | - |
| ABFG96_RS04005 (ABFG96_04005) | - | 787764..788201 (+) | 438 | WP_270217221.1 | hypothetical protein | - |
| ABFG96_RS04010 (ABFG96_04010) | - | 788208..788840 (+) | 633 | WP_347553664.1 | Gp15 family bacteriophage protein | - |
| ABFG96_RS04015 (ABFG96_04015) | - | 788844..794096 (+) | 5253 | WP_347553665.1 | tape measure protein | - |
| ABFG96_RS04020 (ABFG96_04020) | - | 794101..794946 (+) | 846 | WP_270217217.1 | phage tail domain-containing protein | - |
| ABFG96_RS04025 (ABFG96_04025) | - | 794955..796091 (+) | 1137 | WP_270217216.1 | phage tail protein | - |
| ABFG96_RS04030 (ABFG96_04030) | - | 796081..796407 (+) | 327 | WP_270217214.1 | hypothetical protein | - |
| ABFG96_RS04035 (ABFG96_04035) | - | 796397..796672 (+) | 276 | WP_270217212.1 | hypothetical protein | - |
| ABFG96_RS04040 (ABFG96_04040) | - | 796672..798924 (+) | 2253 | WP_270217211.1 | glycosyl hydrolase family 28-related protein | - |
| ABFG96_RS04045 (ABFG96_04045) | - | 798935..799252 (+) | 318 | WP_270217209.1 | XkdX family protein | - |
| ABFG96_RS04050 (ABFG96_04050) | - | 799286..799804 (+) | 519 | WP_195751037.1 | phage holin family protein | - |
| ABFG96_RS04055 (ABFG96_04055) | - | 799788..800906 (+) | 1119 | WP_229563985.1 | N-acetylmuramoyl-L-alanine amidase | - |
| ABFG96_RS04060 (ABFG96_04060) | - | 802034..803410 (+) | 1377 | WP_201626886.1 | amino acid permease | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17828.54 Da Isoelectric Point: 5.9041
>NTDB_id=1001954 ABFG96_RS03910 WP_347553655.1 775526..775999(+) (ssb) [Pediococcus pentosaceus strain MIANGUAN]
MINRTVLVGRLTNDPELKYTGSGVAVATFTVAVNRQFTNSQGEREADFIRCQMWRKAAENFCNFTHKGSLVGIDGRIQTR
SYDNQQGTRVFVTEVVAENFSLLESKNSNQNEQFEQNRPQNNGQNYQNKQNGQSSPSRNPNDPFNSMPDIKDDDLPF
MINRTVLVGRLTNDPELKYTGSGVAVATFTVAVNRQFTNSQGEREADFIRCQMWRKAAENFCNFTHKGSLVGIDGRIQTR
SYDNQQGTRVFVTEVVAENFSLLESKNSNQNEQFEQNRPQNNGQNYQNKQNGQSSPSRNPNDPFNSMPDIKDDDLPF
Nucleotide
Download Length: 474 bp
>NTDB_id=1001954 ABFG96_RS03910 WP_347553655.1 775526..775999(+) (ssb) [Pediococcus pentosaceus strain MIANGUAN]
ATGATTAATCGAACAGTATTAGTTGGACGTTTAACTAACGATCCAGAACTAAAATACACAGGAAGCGGTGTGGCAGTTGC
AACCTTCACAGTAGCCGTTAATCGGCAATTTACTAATTCGCAAGGCGAACGTGAAGCGGATTTTATTAGATGTCAAATGT
GGCGCAAAGCTGCTGAAAACTTCTGTAACTTCACTCACAAAGGTTCACTAGTTGGAATTGATGGACGAATTCAAACTCGT
TCATACGATAATCAGCAAGGTACACGAGTTTTTGTTACTGAGGTCGTAGCGGAGAACTTCTCGCTGCTTGAATCTAAAAA
TAGTAATCAAAATGAACAATTTGAACAGAATAGGCCTCAAAACAATGGACAAAATTATCAGAATAAACAAAATGGTCAAT
CATCACCTAGCAGAAATCCTAACGACCCATTTAATAGCATGCCGGATATCAAGGATGACGATTTACCATTCTAG
ATGATTAATCGAACAGTATTAGTTGGACGTTTAACTAACGATCCAGAACTAAAATACACAGGAAGCGGTGTGGCAGTTGC
AACCTTCACAGTAGCCGTTAATCGGCAATTTACTAATTCGCAAGGCGAACGTGAAGCGGATTTTATTAGATGTCAAATGT
GGCGCAAAGCTGCTGAAAACTTCTGTAACTTCACTCACAAAGGTTCACTAGTTGGAATTGATGGACGAATTCAAACTCGT
TCATACGATAATCAGCAAGGTACACGAGTTTTTGTTACTGAGGTCGTAGCGGAGAACTTCTCGCTGCTTGAATCTAAAAA
TAGTAATCAAAATGAACAATTTGAACAGAATAGGCCTCAAAACAATGGACAAAATTATCAGAATAAACAAAATGGTCAAT
CATCACCTAGCAGAAATCCTAACGACCCATTTAATAGCATGCCGGATATCAAGGATGACGATTTACCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.059 |
100 |
0.618 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.841 |
100 |
0.592 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
67.516 |
0.376 |