Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABFG87_RS09150 Genome accession   NZ_CP156074
Coordinates   1926286..1927086 (+) Length   266 a.a.
NCBI ID   WP_211243452.1    Uniprot ID   -
Organism   Chitiniphilus eburneus strain YS-30     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1921286..1932086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG87_RS09125 - 1921764..1921967 (+) 204 WP_136773818.1 hypothetical protein -
  ABFG87_RS09130 - 1922007..1923410 (-) 1404 WP_136773817.1 C13 family peptidase -
  ABFG87_RS09135 - 1923507..1924370 (-) 864 WP_136773816.1 ZIP family metal transporter -
  ABFG87_RS09140 pgeF 1924472..1925245 (-) 774 WP_136773815.1 peptidoglycan editing factor PgeF -
  ABFG87_RS09145 rluD 1925232..1926287 (-) 1056 WP_136773814.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABFG87_RS09150 comL 1926286..1927086 (+) 801 WP_211243452.1 outer membrane protein assembly factor BamD Machinery gene
  ABFG87_RS09180 - 1928115..1930379 (-) 2265 WP_136773813.1 NADP-dependent malic enzyme -
  ABFG87_RS09185 - 1930530..1930769 (-) 240 WP_375592250.1 hypothetical protein -
  ABFG87_RS09190 - 1930801..1931064 (-) 264 WP_136773812.1 hypothetical protein -
  ABFG87_RS09195 - 1931302..1931547 (+) 246 WP_136773811.1 hypothetical protein -
  ABFG87_RS09200 - 1931774..1931902 (+) 129 WP_281279769.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30529.65 Da        Isoelectric Point: 8.8999

>NTDB_id=1001633 ABFG87_RS09150 WP_211243452.1 1926286..1927086(+) (comL) [Chitiniphilus eburneus strain YS-30]
MNKILPRILAATIAAALIAGCSSTQQEQDETRGWSAEKIYSEAKAEQGSKNFERSNKLLEKLEARYPYGRYAQQAILETA
YNHYKDQEPLLALAAIDRFIKQYPAHPSMDYALYLRGLVHFNETQGFMSFLAKQDMSERDPKAARDSFDSFRQLVTRFPE
SRYAADAQVRMGYLIGALSNYELHVARYYYKRGAYLAAANRGKYLVETHGNTKQVEAALGMMVLSYDKLGMNDLRDDAKR
VLLKNYPETTVLDKDFLTDRAWWAPW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1001633 ABFG87_RS09150 WP_211243452.1 1926286..1927086(+) (comL) [Chitiniphilus eburneus strain YS-30]
ATGAACAAGATTCTACCGCGAATCCTCGCGGCCACGATTGCGGCAGCCCTGATCGCGGGCTGCTCCTCCACTCAGCAGGA
ACAGGATGAAACGCGCGGCTGGTCGGCCGAGAAAATCTATTCCGAAGCCAAGGCCGAACAGGGCAGCAAGAATTTCGAGC
GCTCGAACAAGCTGCTGGAAAAACTCGAGGCACGTTATCCCTATGGCCGCTATGCGCAGCAGGCCATTCTGGAAACGGCG
TACAACCACTACAAGGATCAGGAGCCGCTCCTGGCGCTGGCCGCCATCGACCGCTTCATCAAGCAGTATCCGGCGCATCC
CAGCATGGATTACGCGCTGTATCTGCGTGGCCTGGTGCATTTCAATGAAACGCAGGGCTTCATGTCCTTCCTGGCCAAGC
AGGACATGTCCGAGCGTGACCCGAAGGCCGCGCGGGATTCGTTCGACAGCTTCCGCCAGCTGGTCACCCGGTTCCCGGAA
AGCCGGTATGCCGCCGATGCGCAGGTGCGCATGGGCTACCTGATCGGCGCGTTGTCCAATTACGAGCTGCATGTCGCGCG
CTATTACTACAAGCGCGGCGCCTATCTGGCAGCGGCCAATCGCGGCAAGTACCTGGTGGAAACCCATGGCAACACCAAAC
AGGTGGAGGCCGCGCTGGGCATGATGGTGCTGTCGTACGACAAGCTGGGAATGAACGACCTGCGCGATGACGCCAAGCGC
GTGCTGTTGAAGAACTATCCGGAAACCACGGTGCTGGACAAGGATTTCCTCACCGATCGCGCGTGGTGGGCGCCCTGGTA
A

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(36-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.071

100

0.496
  comL Neisseria gonorrhoeae MS11

48.699

100

0.492

Multiple sequence alignment