Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFG87_RS03860 Genome accession   NZ_CP156074
Coordinates   826256..827632 (+) Length   458 a.a.
NCBI ID   WP_375592015.1    Uniprot ID   -
Organism   Chitiniphilus eburneus strain YS-30     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 821256..832632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG87_RS03840 ttcA 822278..823216 (+) 939 WP_375592013.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  ABFG87_RS03845 - 823216..824001 (+) 786 WP_136773947.1 fused MFS/spermidine synthase -
  ABFG87_RS03850 - 824184..824678 (+) 495 WP_136773946.1 RNA pyrophosphohydrolase -
  ABFG87_RS03855 - 824647..826275 (+) 1629 WP_375592014.1 PAS domain-containing sensor histidine kinase -
  ABFG87_RS03860 pilR 826256..827632 (+) 1377 WP_375592015.1 sigma-54-dependent transcriptional regulator Regulator
  ABFG87_RS03865 ampD 827622..828185 (+) 564 WP_375592016.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ABFG87_RS03870 - 828247..830142 (+) 1896 WP_375592017.1 potassium transporter Kup -
  ABFG87_RS03875 - 830168..830812 (-) 645 WP_375592018.1 pyrimidine 5'-nucleotidase -
  ABFG87_RS03880 - 831038..831475 (-) 438 WP_136773941.1 CBS domain-containing protein -
  ABFG87_RS03885 argB 831696..832574 (-) 879 WP_136773940.1 acetylglutamate kinase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50240.37 Da        Isoelectric Point: 4.8866

>NTDB_id=1001626 ABFG87_RS03860 WP_375592015.1 826256..827632(+) (pilR) [Chitiniphilus eburneus strain YS-30]
MMARKARNARRVLVVDDEVDLAELLELTLIKMGLDVETAYCVADAKALLGRTRYDLVLTDMRMPDGEGLELVEFVQAQRL
DIPVAVITAYGSMQNAVNALKAGAFDYLAKPVSLEQLRTLVKSALNLEESTSGAVEALSGEDRPLLGNSPAIRQVLELVE
KLARSQAPVYVSGESGSGKERAARLIHLSGTRADKPFVAVNCGAIPENLMESEFFGYRKGAFTGAEQDRDGFFQAATGGT
LFLDEVADLPLAMQVKLLRVIQERKVRKVGSTVEEPVDVRLICATHQNLAKCVDAGRFRQDLYYRLNVIELKMPPLREMG
DDIVLIARHVLARLATQNGQEAPSFADDALTALRRYAFPGNVRELENMLERALALSDGSQITGDDLQLSPHGFDEEATGG
ADCPLQDYLDRVERGAIQDALEKTGGNRTQAAKLLGVTFRSLRYRMDRLGLAGKDRDD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1001626 ABFG87_RS03860 WP_375592015.1 826256..827632(+) (pilR) [Chitiniphilus eburneus strain YS-30]
ATGATGGCGAGAAAGGCTAGGAATGCCCGGCGGGTACTGGTGGTCGATGACGAGGTTGATCTCGCCGAACTGCTGGAACT
CACCCTGATCAAGATGGGCCTGGATGTCGAGACCGCGTATTGCGTTGCCGACGCCAAGGCCCTGCTCGGGCGTACCCGCT
ACGACCTGGTGCTGACCGACATGCGCATGCCGGACGGCGAAGGACTGGAACTGGTGGAGTTCGTTCAGGCGCAACGGCTG
GATATTCCGGTGGCGGTGATTACCGCGTACGGCAGCATGCAGAACGCGGTCAACGCGCTCAAGGCGGGGGCGTTCGACTA
CCTGGCCAAGCCGGTGTCGCTGGAACAACTGCGCACCCTGGTCAAATCGGCGCTCAACCTGGAGGAAAGCACCAGTGGCG
CGGTGGAGGCCCTGTCCGGCGAGGATCGCCCGCTGCTGGGCAATTCGCCGGCGATCCGCCAGGTGCTGGAGCTGGTGGAA
AAACTGGCGCGCAGCCAGGCGCCGGTCTACGTGAGTGGCGAATCCGGTAGCGGCAAGGAGCGCGCGGCGCGGCTGATCCA
CCTGAGCGGCACGCGGGCCGACAAGCCTTTCGTTGCGGTGAACTGTGGCGCCATCCCCGAGAACCTGATGGAAAGCGAGT
TTTTCGGTTACCGCAAAGGTGCGTTCACCGGCGCCGAACAGGATCGCGACGGCTTTTTCCAGGCGGCCACCGGCGGCACG
CTGTTTCTCGACGAAGTGGCCGATCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGTGATCCAGGAACGCAAGGTGCG
CAAGGTGGGCAGCACGGTCGAGGAGCCGGTGGACGTACGGCTGATCTGCGCCACGCACCAGAATCTGGCCAAGTGCGTCG
ATGCCGGCCGCTTCCGCCAGGATCTCTATTACCGATTGAACGTGATCGAACTGAAGATGCCGCCGCTACGCGAAATGGGC
GACGACATTGTCCTGATCGCACGGCATGTGCTGGCACGGCTGGCGACGCAGAACGGGCAGGAAGCGCCGTCCTTCGCCGA
CGACGCGCTTACCGCGCTGCGCCGCTATGCCTTTCCCGGCAATGTGCGCGAGCTGGAAAACATGCTGGAGCGCGCGCTGG
CATTGTCCGACGGCAGCCAGATCACCGGCGACGACCTGCAACTGTCGCCGCACGGCTTCGACGAGGAAGCGACCGGGGGC
GCGGATTGTCCCTTGCAGGATTACCTTGACCGCGTGGAGCGCGGGGCCATTCAGGATGCGCTGGAAAAGACCGGCGGCAA
TCGCACCCAGGCGGCCAAGCTGCTGGGCGTGACGTTCCGCTCGCTGCGCTATCGCATGGATCGGCTGGGGCTGGCGGGGA
AAGATCGTGACGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(409-448)

Response regulator receiver domain (Response_reg)

(12-121)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.528

97.162

0.559
  pilR Acinetobacter baumannii strain A118

46.405

100

0.465
  luxO Vibrio cholerae strain A1552

38.288

96.943

0.371

Multiple sequence alignment