Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABFK62_RS18280 Genome accession   NZ_CP156044
Coordinates   3735573..3736391 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain D13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3730573..3741391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFK62_RS18265 (ABFK62_18265) pilE 3730792..3731217 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  ABFK62_RS18270 (ABFK62_18270) pilY2 3731214..3731696 (-) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABFK62_RS18275 (ABFK62_18275) pilY1 3731707..3735561 (-) 3855 WP_059264959.1 VWA domain-containing protein Machinery gene
  ABFK62_RS18280 (ABFK62_18280) pilX 3735573..3736391 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABFK62_RS18285 (ABFK62_18285) pilW 3736388..3737389 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABFK62_RS18290 (ABFK62_18290) pilV 3737390..3737950 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABFK62_RS18295 (ABFK62_18295) fimU 3737944..3738417 (-) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  ABFK62_RS18300 (ABFK62_18300) ispH 3738587..3739537 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABFK62_RS18305 (ABFK62_18305) gmk 3739660..3740289 (+) 630 WP_000015937.1 guanylate kinase -
  ABFK62_RS18310 (ABFK62_18310) rpoZ 3740362..3740640 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABFK62_RS18315 (ABFK62_18315) - 3740679..3740809 (+) 131 Protein_3579 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1001556 ABFK62_RS18280 WP_000149374.1 3735573..3736391(-) (pilX) [Acinetobacter baumannii strain D13]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1001556 ABFK62_RS18280 WP_000149374.1 3735573..3736391(-) (pilX) [Acinetobacter baumannii strain D13]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment