Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EL130_RS00170 Genome accession   NZ_LR134320
Coordinates   29568..30266 (-) Length   232 a.a.
NCBI ID   WP_002263491.1    Uniprot ID   Q8DSH0
Organism   Streptococcus mutans strain NCTC10832     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 24568..35266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS00155 (NCTC10832_00028) - 25140..26048 (-) 909 WP_002263495.1 ABC transporter ATP-binding protein -
  EL130_RS00160 (NCTC10832_00029) - 26336..27585 (+) 1250 Protein_27 ISL3-like element ISSmu2 family transposase -
  EL130_RS00165 (NCTC10832_00031) - 28171..29550 (-) 1380 WP_002283456.1 sensor histidine kinase -
  EL130_RS00170 (NCTC10832_00032) scnR 29568..30266 (-) 699 WP_002263491.1 response regulator transcription factor Regulator
  EL130_RS00175 - 30371..31324 (-) 954 Protein_30 reverse transcriptase domain-containing protein -
  EL130_RS10450 - 31317..31730 (-) 414 Protein_31 transposase -
  EL130_RS00185 (NCTC10832_00033) gatB 31869..33308 (-) 1440 WP_002283458.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  EL130_RS00190 (NCTC10832_00034) gatA 33308..34774 (-) 1467 WP_002263829.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  EL130_RS00195 (NCTC10832_00035) gatC 34774..35076 (-) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26106.25 Da        Isoelectric Point: 6.3461

>NTDB_id=1001507 EL130_RS00170 WP_002263491.1 29568..30266(-) (scnR) [Streptococcus mutans strain NCTC10832]
MSFESQLLKKHILIVDDDTSLNQSIKEVLMSRGFNNISSAYSIDEGIDIFSVSKIDLIILDVMLPDGEGYLLAKYIRKSS
DVPILFLTAKNSPDDEIKGLDSGGDDFVTKPFLPKTLSYRIIALLRRSYKGESELIELTFCTIDLNNASVLKGNEHLSLT
PTEIQILRKLYVNKNHIVSTEAICDAVWGLENFGYEKSLMVHIRNIREKIEKNSSKPVHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=1001507 EL130_RS00170 WP_002263491.1 29568..30266(-) (scnR) [Streptococcus mutans strain NCTC10832]
GTGTCTTTTGAATCACAATTATTGAAAAAGCATATCCTAATCGTAGATGATGATACATCATTGAACCAGTCCATCAAAGA
GGTTTTGATGAGTCGAGGGTTTAACAATATCAGTTCTGCCTATAGTATAGATGAAGGGATTGATATTTTTTCGGTATCAA
AGATTGATTTGATCATACTGGATGTCATGTTGCCCGATGGGGAAGGTTATTTATTGGCCAAATACATTCGAAAATCGTCA
GATGTCCCTATTTTATTTTTAACCGCAAAAAATAGTCCCGATGATGAAATCAAAGGACTTGATTCAGGAGGAGATGATTT
TGTCACCAAACCATTTCTTCCCAAGACCCTGTCTTATAGGATTATAGCCTTACTGAGGCGATCCTACAAAGGTGAATCTG
AACTTATCGAACTTACTTTCTGCACCATTGATTTAAATAATGCCAGTGTTTTAAAAGGCAATGAACATCTATCACTGACC
CCAACAGAAATTCAGATTCTTCGCAAACTTTATGTCAATAAAAACCACATCGTCTCCACAGAAGCGATTTGCGATGCGGT
GTGGGGACTTGAAAACTTTGGATACGAAAAATCATTAATGGTACATATCCGCAATATCAGAGAAAAAATCGAGAAAAACT
CCTCAAAGCCAGTGCATCTCATTACAGTCAAGGGTCTCGGGTATAAGCTGGTCATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.411

96.552

0.409
  vicR Streptococcus mutans UA159

37.826

99.138

0.375
  micA Streptococcus pneumoniae Cp1015

36.842

98.276

0.362