Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABFV68_RS14580 Genome accession   NZ_CP156029
Coordinates   2993086..2993730 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain CH1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2988086..2998730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS14545 (ABFV68_14545) - 2989265..2989696 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  ABFV68_RS14550 (ABFV68_14550) - 2989696..2990037 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ABFV68_RS14555 (ABFV68_14555) - 2990030..2991517 (+) 1488 WP_032867186.1 Na+/H+ antiporter subunit D -
  ABFV68_RS14560 (ABFV68_14560) - 2991523..2991999 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  ABFV68_RS14565 (ABFV68_14565) - 2991999..2992283 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  ABFV68_RS14570 (ABFV68_14570) mnhG 2992267..2992641 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ABFV68_RS14575 (ABFV68_14575) - 2992681..2993064 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  ABFV68_RS14580 (ABFV68_14580) comA 2993086..2993730 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ABFV68_RS14585 (ABFV68_14585) comP 2993811..2996117 (-) 2307 WP_041482505.1 histidine kinase Regulator
  ABFV68_RS14590 (ABFV68_14590) comX 2996140..2996310 (-) 171 WP_015418105.1 competence pheromone ComX -
  ABFV68_RS14595 (ABFV68_14595) - 2996307..2997236 (-) 930 WP_231945405.1 polyprenyl synthetase family protein -
  ABFV68_RS14600 (ABFV68_14600) degQ 2997367..2997507 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ABFV68_RS14605 (ABFV68_14605) - 2997970..2998311 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1001403 ABFV68_RS14580 WP_003152052.1 2993086..2993730(-) (comA) [Bacillus velezensis strain CH1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1001403 ABFV68_RS14580 WP_003152052.1 2993086..2993730(-) (comA) [Bacillus velezensis strain CH1]
ATGAAAAAGATACTAGTGATTGATGATCATCCAGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCACTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment