Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EL139_RS07580 Genome accession   NZ_LR134316
Coordinates   1512524..1514515 (+) Length   663 a.a.
NCBI ID   WP_111716885.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1507524..1519515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL139_RS07560 (NCTC6181_01542) - 1508354..1508512 (+) 159 WP_002984154.1 hypothetical protein -
  EL139_RS07565 (NCTC6181_01543) pnuC 1508517..1509209 (-) 693 WP_111716891.1 nicotinamide riboside transporter PnuC -
  EL139_RS07570 (NCTC6181_01544) - 1509420..1510160 (-) 741 WP_111716889.1 amino acid ABC transporter ATP-binding protein -
  EL139_RS07575 (NCTC6181_01545) - 1510160..1512337 (-) 2178 WP_111716887.1 ABC transporter substrate-binding protein/permease -
  EL139_RS07580 (NCTC6181_01546) uvrB 1512524..1514515 (+) 1992 WP_111716885.1 excinuclease ABC subunit UvrB Machinery gene
  EL139_RS07585 (NCTC6181_01547) - 1514768..1514911 (+) 144 WP_012767158.1 teichoic acid D-Ala incorporation-associated protein DltX -
  EL139_RS07590 (NCTC6181_01548) dltA 1514923..1516461 (+) 1539 WP_111716883.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  EL139_RS07595 (NCTC6181_01549) dltB 1516458..1517714 (+) 1257 WP_111716881.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  EL139_RS07600 (NCTC6181_01550) dltC 1517732..1517971 (+) 240 WP_111716879.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  EL139_RS07605 (NCTC6181_01551) dltD 1517964..1519220 (+) 1257 WP_111716877.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 75706.62 Da        Isoelectric Point: 4.5371

>NTDB_id=1001385 EL139_RS07580 WP_111716885.1 1512524..1514515(+) (uvrB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
MIDKRDDKPFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDQLLNQLVDIQFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGKTI
GEVDHLILFPATHFVTNDEHMEQSIAKIQAELEEQLKVFEAEGKLLEAQRLRQRTEYDIEMLREMGYTNGVENYSRHMDG
RAAGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKQMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTGTIVEQIIRPTGLLDPEIDVRPSMGQMDDLLGEINQRVERGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNADGHVIMYADK
VTESMQRAIDETARRREIQMAYNEAHGIIPQTIKKDIRDLISISKAAESDVAETAVDYETMSRSERKEAIKTLQKQMQEA
AELLDFELAAQIRDMILELKLMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=1001385 EL139_RS07580 WP_111716885.1 1512524..1514515(+) (uvrB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
ATGATTGATAAACGTGATGACAAACCTTTTCATTTGGTTTCAAAATATGAGCCATCTGGCGACCAACCCCAAGCTATTGA
GACCTTAGTAGACAATATTGAAGGCGGAGAAAAAGCTCAGATTCTTTTGGGTGCTACTGGGACGGGAAAGACCTATACCA
TGAGTCAGGTCATTAACAAGGTTAATAAACCGACCTTAGTGATTGCTCACAATAAAACCTTAGCGGGACAGCTTTATGGA
GAGTTCAAGGAATTTTTCCCTGATAATGCTGTGGAATATTTTGTTTCCTATTATGATTACTACCAACCTGAAGCCTATGT
GCCATCAAGCGACACCTATATCGAAAAAGACAGCTCTGTCAATGATGAGATTGATAAACTTCGTCATTCCGCAACCTCAG
CCTTATTGGAGCGTAATGATGTTATTGTAGTGGCTTCGGTCTCATGTATTTACGGACTGGGTTCTCCAAAAGAGTATGCT
GATTCAGCAGTGAGTCTCAGACCTGGACAAGAAATTTCTAGGGATCAACTGCTTAACCAGCTGGTGGATATTCAGTTTGA
GCGTAACGATATTGATTTTCAACGTGGCCGTTTTCGAGTTCGCGGGGATGTGGTTGAAGTTTTTCCCGCTTCAAGAGATG
AACATGCCTTTCGGATAGAATTTTTTGGAGATGAGATTGATCGTATTCGAGAGATCGAAAGTTTGACTGGTAAGACCATA
GGAGAAGTAGACCATTTGATTCTGTTTCCTGCTACTCACTTTGTTACCAATGATGAACACATGGAACAATCCATTGCTAA
GATTCAAGCTGAACTGGAAGAACAGTTGAAGGTTTTTGAAGCTGAAGGCAAATTATTGGAAGCGCAGCGATTACGCCAAA
GAACTGAGTATGACATTGAAATGTTAAGGGAGATGGGTTACACTAACGGGGTTGAAAACTATTCTCGCCATATGGATGGT
CGAGCAGCAGGAGAACCCCCCTATACGTTATTAGACTTCTTCCCAGAAGATTTTTTGATTATGATTGATGAAAGTCACAT
GACAATGGGGCAGATTAAAGGCATGTATAATGGTGACCAAGCTAGAAAGCAAATGCTAGTTGATTATGGGTTTAGGTTGC
CCTCTGCTTTGGATAATCGTCCTTTAAGACGGGAAGAGTTTGAAAGCCATGTACACCAAATCGTGTATGTTTCTGCTACT
CCAGGTGACTATGAAATGGAGCAGACAGGTACAATTGTGGAACAAATCATTCGTCCAACGGGCTTGCTTGATCCTGAAAT
CGATGTGCGACCAAGTATGGGACAAATGGATGACCTATTAGGAGAAATCAATCAGCGTGTTGAACGTGGTGAGCGGACCT
TTATCACAACACTGACAAAAAAAATGGCAGAAGACCTGACAGACTATCTAAAAGAAATGGGTGTCAAGGTCAAATATATG
CATAGCGACATAAAGACCTTAGAACGGACAGAAATTATCCGTGACTTGAGGTTAGGTGTCTTTGATGTACTTATAGGAAT
CAACTTACTGCGCGAGGGAATTGATGTGCCAGAAGTTAGTCTTGTTGCCATTTTAGATGCGGATAAGGAGGGCTTCCTCC
GTAACGAGCGTGGTTTGATTCAGACTATTGGACGAGCAGCCCGGAATGCAGATGGACATGTGATTATGTATGCTGATAAG
GTCACGGAATCGATGCAACGGGCTATCGATGAAACGGCTCGTCGTCGTGAGATTCAAATGGCTTATAATGAAGCACATGG
GATTATCCCGCAAACTATCAAAAAGGATATCAGAGATCTTATCAGTATCAGCAAAGCAGCGGAGTCTGATGTCGCAGAAA
CTGCAGTGGACTATGAAACCATGTCTCGTTCTGAGCGAAAAGAAGCTATTAAAACCTTACAGAAGCAGATGCAAGAAGCA
GCTGAATTACTTGATTTTGAATTGGCTGCTCAAATTCGTGACATGATATTAGAGTTGAAACTAATGGATTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(442-549)

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB/uvrC motif (UVR)

(627-660)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

86.576

100

0.866
  uvrB Streptococcus pneumoniae D39

86.576

100

0.866
  uvrB Streptococcus pneumoniae TIGR4

86.425

100

0.864

Multiple sequence alignment