Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABFV68_RS07060 Genome accession   NZ_CP156029
Coordinates   1350004..1350468 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain CH1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1345004..1355468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV68_RS07040 (ABFV68_07040) - 1345485..1347305 (+) 1821 WP_007409606.1 PAS domain-containing protein -
  ABFV68_RS07045 (ABFV68_07045) - 1347330..1348499 (-) 1170 WP_007409607.1 aminotransferase A -
  ABFV68_RS07050 (ABFV68_07050) - 1348700..1348861 (-) 162 WP_007409608.1 hypothetical protein -
  ABFV68_RS07055 (ABFV68_07055) cheV 1349050..1349961 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  ABFV68_RS07060 (ABFV68_07060) kre 1350004..1350468 (-) 465 WP_003154622.1 YkyB family protein Regulator
  ABFV68_RS07065 (ABFV68_07065) - 1350591..1351883 (-) 1293 WP_007611093.1 MFS transporter -
  ABFV68_RS07070 (ABFV68_07070) - 1351959..1352453 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  ABFV68_RS07075 (ABFV68_07075) - 1352528..1353391 (-) 864 WP_346988088.1 metallophosphoesterase -
  ABFV68_RS07080 (ABFV68_07080) fadH 1353536..1354300 (+) 765 WP_007409613.1 2,4-dienoyl-CoA reductase -
  ABFV68_RS07085 (ABFV68_07085) - 1354414..1354962 (+) 549 WP_007409614.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1001373 ABFV68_RS07060 WP_003154622.1 1350004..1350468(-) (kre) [Bacillus velezensis strain CH1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1001373 ABFV68_RS07060 WP_003154622.1 1350004..1350468(-) (kre) [Bacillus velezensis strain CH1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGTAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment