Detailed information NTG0100129

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: BAMY6639_RS03965
• Genome accession: NZ_CP006058
• Coordinates: 858271..858876 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens UMAF6639
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 853271..863876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6639_RS03930 (BAMY6639_04155)	-	853284..853940 (-)	657	WP_003152699.1	DUF421 domain-containing protein	-
BAMY6639_RS03935 (BAMY6639_04160)	-	854107..854493 (+)	387	WP_003152697.1	TIGR04086 family membrane protein	-
BAMY6639_RS03940 (BAMY6639_04165)	yajC	854545..854823 (-)	279	WP_061860756.1	preprotein translocase subunit YajC	-
BAMY6639_RS03945 (BAMY6639_04170)	tgt	854836..855981 (-)	1146	WP_007408186.1	tRNA guanosine(34) transglycosylase Tgt	-
BAMY6639_RS03950 (BAMY6639_04175)	queA	856009..857037 (-)	1029	WP_003152692.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
BAMY6639_RS03955 (BAMY6639_04180)	-	857063..857263 (-)	201	WP_003152687.1	DUF2905 domain-containing protein	-
BAMY6639_RS03960 (BAMY6639_04185)	ruvB	857256..858260 (-)	1005	WP_007408185.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BAMY6639_RS03965 (BAMY6639_04190)	ruvA	858271..858876 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
BAMY6639_RS03970 (BAMY6639_04195)	-	859011..859520 (-)	510	WP_015417917.1	intercompartmental signaling factor BofC	-
BAMY6639_RS20870	-	859653..859772 (-)	120	WP_007612850.1	hypothetical protein	-
BAMY6639_RS03980 (BAMY6639_04205)	-	859906..860499 (-)	594	WP_014721606.1	YhcN/YlaJ family sporulation lipoprotein	-
BAMY6639_RS03985 (BAMY6639_04210)	safA	860648..861835 (-)	1188	WP_061860757.1	SafA/ExsA family spore coat assembly protein	-
BAMY6639_RS03990 (BAMY6639_04215)	nadA	861962..863065 (-)	1104	WP_029326050.1	quinolinate synthase NadA	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=100129 BAMY6639_RS03965 WP_003152683.1 858271..858876(-) (ruvA) [Bacillus amyloliquefaciens UMAF6639]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=100129 BAMY6639_RS03965 WP_003152683.1 858271..858876(-) (ruvA) [Bacillus amyloliquefaciens UMAF6639]
GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGATG
CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTTACAAAGCTGCTGAACGTCACCGGCATCGGGCCG
AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTTGCCGACGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT
GAAGCGCTCCGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408