Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFT89_RS16940 Genome accession   NZ_CP155977
Coordinates   3834045..3835439 (+) Length   464 a.a.
NCBI ID   WP_043921909.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain bglFP 6746     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3829103..3882194 3834045..3835439 within 0


Gene organization within MGE regions


Location: 3829103..3882194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT89_RS16915 (ABFT89_16910) - 3829103..3829405 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABFT89_RS16920 (ABFT89_16915) - 3829409..3829819 (-) 411 WP_029217117.1 CopG family ribbon-helix-helix protein -
  ABFT89_RS16925 (ABFT89_16920) sucD 3829923..3830798 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFT89_RS16930 (ABFT89_16925) sucC 3830823..3831992 (-) 1170 WP_012437609.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFT89_RS16935 (ABFT89_16930) - 3832226..3833836 (+) 1611 WP_407472602.1 sensor histidine kinase -
  ABFT89_RS16940 (ABFT89_16935) pilR 3834045..3835439 (+) 1395 WP_043921909.1 sigma-54 dependent transcriptional regulator Regulator
  ABFT89_RS16945 (ABFT89_16940) - 3835730..3835993 (+) 264 WP_407366831.1 hypothetical protein -
  ABFT89_RS16950 (ABFT89_16945) - 3835993..3836730 (+) 738 WP_283269169.1 zeta toxin family protein -
  ABFT89_RS16955 (ABFT89_16950) pilB 3836913..3838645 (-) 1733 Protein_3271 type IV-A pilus assembly ATPase PilB -
  ABFT89_RS16960 (ABFT89_16955) - 3838687..3839100 (-) 414 WP_283269165.1 pilin -
  ABFT89_RS16965 (ABFT89_16960) comP 3839197..3839628 (-) 432 WP_024939397.1 pilin Machinery gene
  ABFT89_RS16970 (ABFT89_16965) - 3839976..3841234 (+) 1259 Protein_3274 type II secretion system F family protein -
  ABFT89_RS16975 (ABFT89_16970) - 3841241..3842104 (+) 864 WP_040940797.1 A24 family peptidase -
  ABFT89_RS16980 (ABFT89_16975) coaE 3842118..3842741 (+) 624 WP_228424129.1 dephospho-CoA kinase -
  ABFT89_RS16985 (ABFT89_16980) - 3843270..3843671 (+) 402 WP_283269159.1 SymE family type I addiction module toxin -
  ABFT89_RS16990 (ABFT89_16985) - 3843746..3844036 (+) 291 WP_011038219.1 DUF1778 domain-containing protein -
  ABFT89_RS16995 (ABFT89_16990) - 3844033..3844524 (+) 492 WP_223646366.1 GNAT family N-acetyltransferase -
  ABFT89_RS17000 (ABFT89_16995) - 3844667..3846001 (-) 1335 WP_012437598.1 HAMP domain-containing sensor histidine kinase -
  ABFT89_RS17005 (ABFT89_17000) - 3845994..3846671 (-) 678 WP_003490678.1 response regulator transcription factor -
  ABFT89_RS17010 (ABFT89_17005) rimK 3847321..3848196 (-) 876 WP_011038222.1 30S ribosomal protein S6--L-glutamate ligase -
  ABFT89_RS17015 (ABFT89_17010) glgX 3848689..3850818 (+) 2130 WP_283269153.1 glycogen debranching protein GlgX -
  ABFT89_RS17020 (ABFT89_17015) - 3851357..3851749 (-) 393 WP_011038224.1 H-NS family nucleoid-associated regulatory protein -
  ABFT89_RS17025 (ABFT89_17020) - 3851840..3852235 (-) 396 WP_011038225.1 hypothetical protein -
  ABFT89_RS17030 (ABFT89_17025) - 3852420..3852566 (-) 147 WP_116889157.1 hypothetical protein -
  ABFT89_RS17035 (ABFT89_17030) - 3852630..3852860 (+) 231 WP_283269150.1 hypothetical protein -
  ABFT89_RS17040 (ABFT89_17035) - 3853150..3853521 (-) 372 WP_407472603.1 hypothetical protein -
  ABFT89_RS17045 (ABFT89_17040) - 3854216..3854557 (+) 342 WP_283269146.1 hypothetical protein -
  ABFT89_RS17050 (ABFT89_17045) - 3854610..3856205 (-) 1596 WP_407472715.1 MobA/MobL family protein -
  ABFT89_RS17060 (ABFT89_17055) - 3857603..3858829 (-) 1227 WP_167766504.1 hypothetical protein -
  ABFT89_RS17065 (ABFT89_17060) - 3858883..3860835 (-) 1953 WP_283269142.1 hypothetical protein -
  ABFT89_RS17070 (ABFT89_17065) - 3861184..3861834 (-) 651 WP_167766506.1 hypothetical protein -
  ABFT89_RS17075 (ABFT89_17070) - 3861874..3865897 (-) 4024 Protein_3295 hypothetical protein -
  ABFT89_RS17080 (ABFT89_17075) - 3865931..3866527 (-) 597 WP_345782097.1 DUF1629 domain-containing protein -
  ABFT89_RS17085 (ABFT89_17080) - 3866666..3867146 (-) 481 Protein_3297 RadC family protein -
  ABFT89_RS17090 (ABFT89_17085) - 3867554..3867769 (-) 216 WP_167766510.1 hypothetical protein -
  ABFT89_RS17095 (ABFT89_17090) - 3868315..3868473 (+) 159 Protein_3299 integrase -
  ABFT89_RS17100 (ABFT89_17095) - 3868507..3869609 (-) 1103 Protein_3300 IS3-like element IS1404 family transposase -
  ABFT89_RS17105 (ABFT89_17100) - 3869675..3870922 (+) 1248 Protein_3301 site-specific integrase -
  ABFT89_RS17110 (ABFT89_17105) - 3871105..3871440 (-) 336 WP_167766512.1 hypothetical protein -
  ABFT89_RS17115 (ABFT89_17110) - 3871467..3872996 (-) 1530 WP_209271699.1 ATP-binding protein -
  ABFT89_RS17120 (ABFT89_17115) dndD 3873029..3875077 (-) 2049 WP_407472604.1 DNA sulfur modification protein DndD -
  ABFT89_RS17125 (ABFT89_17125) dndC 3875303..3876433 (-) 1131 WP_167766515.1 DNA phosphorothioation system sulfurtransferase DndC -
  ABFT89_RS17130 (ABFT89_17130) - 3876604..3876885 (-) 282 WP_407366844.1 helix-turn-helix domain-containing protein -
  ABFT89_RS17135 (ABFT89_17135) - 3877047..3877808 (+) 762 WP_283269134.1 hypothetical protein -
  ABFT89_RS17140 (ABFT89_17140) - 3877851..3878165 (+) 315 WP_283269132.1 hypothetical protein -
  ABFT89_RS17145 (ABFT89_17145) - 3878183..3878542 (+) 360 WP_167766613.1 hypothetical protein -
  ABFT89_RS17150 (ABFT89_17150) - 3879013..3879876 (+) 864 WP_167766519.1 hypothetical protein -
  ABFT89_RS17155 (ABFT89_17155) - 3879892..3880638 (+) 747 WP_167766520.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50279.66 Da        Isoelectric Point: 6.3588

>NTDB_id=1000608 ABFT89_RS16940 WP_043921909.1 3834045..3835439(+) (pilR) [Xanthomonas campestris pv. campestris strain bglFP 6746]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1000608 ABFT89_RS16940 WP_043921909.1 3834045..3835439(+) (pilR) [Xanthomonas campestris pv. campestris strain bglFP 6746]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTACGTGTGCCACCGTTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment